bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_3564_orf1 Length=233 Score E Sequences producing significant alignments: (Bits) Value 5833.PFF1070c 90.9 3e-17 > 5833.PFF1070c Length=860 Score = 90.9 bits (224), Expect = 3e-17, Method: Composition-based stats. Identities = 46/92 (50%), Positives = 63/92 (68%), Gaps = 4/92 (4%) Query 62 NQTSDRDNSTTATT-PPSSATHAVEGAFLPGRAKIFFKTFGCSHNISDSEYMQGLLHESG 120 N+T D+STT P S + + LP KI+FK+FGC+HN SDSE+M GLL G Sbjct 214 NKTKKFDDSTTDNNMDPFSNNNII---ILPENYKIYFKSFGCAHNSSDSEFMMGLLANYG 270 Query 121 YRFVDSLEEADICVVNSCTVKSPSEFALYSVI 152 ++FV +EE DIC+VNSCTVK+PSE ++ ++I Sbjct 271 FKFVKKIEECDICIVNSCTVKNPSEESMKTII 302 Lambda K H 0.309 0.124 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 66220486273 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40