bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_3543_orf1 Length=112 Score E Sequences producing significant alignments: (Bits) Value 4896.SPBC9B6.05c 100 1e-20 > 4896.SPBC9B6.05c Length=93 Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 48/90 (53%), Positives = 69/90 (76%), Gaps = 4/90 (4%) Query 24 MKNAQMLQEPLDIARLSVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDA 83 M++AQ + EPLD+ RLS++E V+VK RG+R+L G LH+YD HLN+VL DAEE +T+ DD Sbjct 1 MESAQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDE 60 Query 84 T---NKLSKTVRK-LPLIFVRGDAVVLLSP 109 +K KT+RK ++FVRGD+V+L++P Sbjct 61 ETDKDKALKTIRKHYEMLFVRGDSVILIAP 90 Lambda K H 0.317 0.133 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22937329312 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40