bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: eggV2
2,483,276 sequences; 915,453,621 total letters
Query= Eten_3529_orf1
Length=183
Score E
Sequences producing significant alignments: (Bits) Value
5833.PF11_0055 87.4 2e-16
> 5833.PF11_0055
Length=424
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 79/148 (53%), Gaps = 10/148 (6%)
Query 30 AAAAPLLLLLLLQQAAAARPLIDPMKHDIGVVSEATWSGKVLKFRDNSVFSVLFFDPLSA 89
+ +LLL +A L++ +KHD+ +V+ + ++ V KFR+ VF+VLFF +
Sbjct 7 SCVISFFILLLFCKAYNTSSLLETIKHDLQIVNNSNFNTVVNKFRNEKVFAVLFFKKSNK 66
Query 90 DSRALIDGVYDHFAKKMKGIVQVLAVDCSQNSKLCK--------DHAPSGLPQIVIFPPF 141
+ + +I Y+ A K KGI+ + VDC +N+ LC+ D+ S +I+P
Sbjct 67 NIKNVIKN-YNDVASKFKGILTLCVVDCDENASLCENELSLYVPDYKSSNTHHFLIYPIN 125
Query 142 PLPKFTFQGPKDVESLSKAVRPLIPSNV 169
P+PKF F+ + ES K LIPS +
Sbjct 126 PMPKFVFKD-EITESNIKKYTYLIPSKI 152
Lambda K H
0.321 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 38900011563
Database: eggV2
Posted date: Dec 15, 2009 4:47 PM
Number of letters in database: 915,453,621
Number of sequences in database: 2,483,276
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40