bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_3480_orf2 Length=159 Score E Sequences producing significant alignments: (Bits) Value 3702.AT1G28350.1 145 5e-34 > 3702.AT1G28350.1 Length=776 Score = 145 bits (365), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 68/131 (51%), Positives = 95/131 (72%), Gaps = 1/131 (0%) Query 30 KDRKKMSKSNADSAIFMEDSEAEVNRKIRKAFCPPAQVHGNPCVAYVERLVFP-DKEFHV 88 + +KKMSKS+ SAIFMED EAEVN KI+KA+CPP V GNPC+ YV+ ++ P EF V Sbjct 269 QGQKKMSKSDPSSAIFMEDEEAEVNVKIKKAYCPPDIVEGNPCLEYVKHIILPWFSEFTV 328 Query 89 QRTLENGGNIVFKTAEEFKRSFAAGELHPADLKAALAREINRQLEPVRRHFQTDENAKKL 148 +R + GGN FK+ E+ + +G+LHP DLK AL++ +N+ L+PVR HF+T+ AK L Sbjct 329 ERDEKYGGNRTFKSFEDITTDYESGQLHPKDLKDALSKALNKILQPVRDHFKTNSRAKNL 388 Query 149 LQEISKYKITR 159 L+++ YK+TR Sbjct 389 LKQVKGYKVTR 399 Lambda K H 0.320 0.132 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 26246233818 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40