bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_3448_orf2 Length=95 Score E Sequences producing significant alignments: (Bits) Value 3702.AT4G30220.1 120 1e-26 > 3702.AT4G30220.1 Length=88 Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 53/86 (61%), Positives = 69/86 (80%), Gaps = 0/86 (0%) Query 10 MSLAPLNPKPFLTSLTGKQVMVKLKWGMEYKGYLKSFDDYMNIHLLNSEEWVEGNFKGSL 69 M+ P+NPKPFL +LTGK V+VKLKWGMEYKG+L S D YMN+ L N+EE+++G G+L Sbjct 1 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNL 60 Query 70 GEVLIRCNNVLYIRQVQGEDEAEEAS 95 GE+LIRCNNVLY+R V ++E E+A Sbjct 61 GEILIRCNNVLYVRGVPEDEELEDAD 86 Lambda K H 0.315 0.134 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22621220430 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40