bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_3424_orf1 Length=82 Score E Sequences producing significant alignments: (Bits) Value 3702.AT5G42300.1 136 2e-31 > 3702.AT5G42300.1 Length=73 Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 62/73 (84%), Positives = 69/73 (94%), Gaps = 0/73 (0%) Query 10 MIEVILNDRLGRKIRVKCNPDDTVGDLKKLVAAQCGTRPDKIRIQKWYTVYKDHITLEDY 69 MIEV+LNDRLG+K+RVKCN DDT+GDLKKLVAAQ GTR +KIRIQKWY +YKDHITL+DY Sbjct 1 MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60 Query 70 EIHDGMGLELYYN 82 EIHDGMGLELYYN Sbjct 61 EIHDGMGLELYYN 73 Lambda K H 0.321 0.143 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22731359797 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40