bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_3359_orf1 Length=265 Score E Sequences producing significant alignments: (Bits) Value 3702.AT1G27840.3 77.0 6e-13 > 3702.AT1G27840.3 Length=451 Score = 77.0 bits (188), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 79/193 (40%), Gaps = 50/193 (25%) Query 40 RRAHAGHSRSITSVEFMPGDNGLFVSTGLDKVLKVLLQELRATVHCTYGPLSSHTRGVWL 99 ++ GH +I+S + P D GLF++ D LKV Sbjct 96 KQHENGHKYAISSAIWYPIDTGLFITGSFDHYLKV------------------------- 130 Query 100 VWDTRAWECVLDIPVESPILCCAFDRVAFQSKTLNPSKHSSRGPVARSAEIPADLALAAG 159 WDT + V+D + + A +A S TL +AAG Sbjct 131 -WDTNTAQAVVDFKMPGKVYRTAMSSMAM-SHTL----------------------IAAG 166 Query 160 CQDGSIRIFDMRCGVAQQALLGHTGAVVSVVWDSCTPHQLFSGSCDGSIRKWDIRRNDAC 219 +D +R+ D+ G L GH V+SV W + + L++G CDG+IR WDIRR C Sbjct 167 TEDVQVRLCDIASGAFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRA-GC 225 Query 220 MMMFDKDKPDLDF 232 + D+ + L F Sbjct 226 FRVLDQSQTQLGF 238 Lambda K H 0.322 0.134 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 83755957455 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40