bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_3150_orf1 Length=169 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd8_4760 95.5 5e-19 > 5807.cgd8_4760 Length=348 Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 44/66 (66%), Positives = 51/66 (77%), Gaps = 0/66 (0%) Query 104 KLSPEEKAAFSADWKQLQQDDISSADYYFNSYAHFSIHEEMIKDSVRTCSYQRAIMDNQH 163 K + EE F W L Q+DISSADYYFNSYAHF IHEEM+KDSVRT SYQ+AIM N+H Sbjct 3 KPTEEELKEFKNSWNPLVQEDISSADYYFNSYAHFGIHEEMLKDSVRTGSYQKAIMSNKH 62 Query 164 LFRGKV 169 LF+ K+ Sbjct 63 LFQDKI 68 Lambda K H 0.318 0.130 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 30997188850 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40