bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_3044_orf1 Length=346 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd2_1300 365 1e-99 > 5807.cgd2_1300 Length=677 Score = 365 bits (937), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 184/332 (55%), Positives = 230/332 (69%), Gaps = 43/332 (12%) Query 55 FFSLCTKCATDGKDK-----PLREPAK---------GFITRSESYVNASA-------ASR 93 + ++CTKCA + + K P R+P K G I S+S+V+A+ + + Sbjct 65 YAAMCTKCAGELQQKLNPTEPYRDPKKVSGKEQISRGLIIESKSFVDANKNIKFSKRSDK 124 Query 94 WEVDELCGKEPHKEPSGP--------------------VFDRSRFVQEVQLDGTVSINDI 133 E LC P+G +FDR+ +QE L +IND Sbjct 125 NEYAGLCSSPEVTTPNGERETSTDSNIKNTESTKVSHGIFDRTCLIQEHALVNR-NINDF 183 Query 134 FDFSHGQNLGKGSYGQVMKARDFKTGTTRAIKVVYKPRIENVTRLKREILIMKRLDHPNI 193 ++ + G NLG+GSYG V+KA D ++G RA+K++ KP++EN+ RLKREILIMKRLDHPNI Sbjct 184 YELNLG-NLGRGSYGSVVKAIDKQSGAQRAVKIILKPKLENINRLKREILIMKRLDHPNI 242 Query 194 IKLFEVYEDEKNLYLVMELCTGGELFERIIKSGHFSERYAACLMRQVFSAAAYCHANNVM 253 IKLFEV+ED LY VME+CTGGELF+RIIK GHFSERYAA +MRQVFSA AYCH+N M Sbjct 243 IKLFEVFEDTNYLYFVMEICTGGELFDRIIKRGHFSERYAAVIMRQVFSAIAYCHSNEFM 302 Query 254 HRDLKPENLLYADSSPLSALKVIDWGFAARCGRSHKFSSVVGTPYYVAPEVLFGKYGSEC 313 HRDLKPENLL++DSSP S LKVIDWGFAA+C ++HKF+SVVGTPYYVAPEVL+G Y C Sbjct 303 HRDLKPENLLFSDSSPNSLLKVIDWGFAAKCPKTHKFTSVVGTPYYVAPEVLYGSYSKLC 362 Query 314 DIWSTGVILFILLCGYPPFHGKDNQAILKKVQ 345 D+WS GVIL+ILLCGYPPFHGKDN IL+KV+ Sbjct 363 DLWSAGVILYILLCGYPPFHGKDNVEILRKVK 394 Lambda K H 0.321 0.138 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 129139090689 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40