bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_2777_orf1 Length=162 Score E Sequences producing significant alignments: (Bits) Value 5833.PF08_0039 117 9e-26 > 5833.PF08_0039 Length=139 Score = 117 bits (294), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 56/111 (50%), Positives = 77/111 (69%), Gaps = 1/111 (0%) Query 45 GKKAATAGKATK-IKFVIDCQKPVEDNILEAKGLEKFLQSRIKVAGKLNNFGEKIEVFRE 103 G K K+TK IK+V+DC KPV+D IL+ GLE+F + +IKV K NN K+ V + Sbjct 27 GLKKQKMNKSTKGIKYVLDCTKPVKDTILDISGLEQFFKDKIKVDKKTNNLKNKVVVTSD 86 Query 104 KAKVCVTAELPFSKRYLKYLVKKYLKKQMLRDFLRVVANNKTSYELRYFQM 154 + K+ +T +PFSKRY+KYL KKY+K +RDFLRV+A K +YE +YFQ+ Sbjct 87 EYKIYITVHIPFSKRYIKYLAKKYIKMHQIRDFLRVIAKGKLAYEFKYFQL 137 Lambda K H 0.318 0.132 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 27386790332 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40