bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_2682_orf3 Length=254 Score E Sequences producing significant alignments: (Bits) Value 5833.PF11_0044 189 6e-47 > 5833.PF11_0044 Length=1462 Score = 189 bits (480), Expect = 6e-47, Method: Composition-based stats. Identities = 95/216 (43%), Positives = 134/216 (62%), Gaps = 0/216 (0%) Query 14 VNSATRVVLEEGAELHHVYSQELDEDSAHFENLSVCCQPRSKYKLTFVDVGAAISRFALQ 73 VN +R+ LEE + + H SQEL + HF N+SV + YK V +G+ SR LQ Sbjct 1235 VNGFSRICLEEKSNVKHTLSQELGNNVWHFHNVSVKNGLNANYKFVDVLLGSLSSRINLQ 1294 Query 74 VEGSEGSSHVSRGISLLNKDQDHSKFEMLHHIAPDAETDQVHKSLVAGKARAIWRGRIRI 133 +EG +G S G+SLL Q+ S++EM HH P ET+Q+ K LV+ KA A+WR R RI Sbjct 1295 IEGEKGCKQESYGLSLLEDKQNISQYEMFHHEHPSMETNQLFKCLVSDKAHAVWRSRGRI 1354 Query 134 ERQGTGASASSLNRVILLEDGARCVAVPTLEIVPEDIKKATHGAAIRDFDTEPLFYMMSR 193 ER A ++L + ILL GA V +PTLEI+P DI+ A HGA I D + EP+F +M+R Sbjct 1355 ERNAIKAKLNTLCKSILLNFGASAVCIPTLEIIPSDIECANHGATISDLEKEPIFSLMTR 1414 Query 194 GLPIDKAKRLLMLAFVDDVVSPVNDEKLAARVRQKV 229 G+ A+ ++M +FV +++ ++DE L RV QKV Sbjct 1415 GISERNAREIMMNSFVKEILDHISDENLKNRVYQKV 1450 Lambda K H 0.318 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 78050691609 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40