bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_2527_orf1 Length=148 Score E Sequences producing significant alignments: (Bits) Value 3702.AT5G48870.1 121 6e-27 > 3702.AT5G48870.1 Length=88 Score = 121 bits (303), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 51/80 (63%), Positives = 67/80 (83%), Gaps = 0/80 (0%) Query 58 LPLALVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHLETI 117 LP L+D+C+GS++WVIMKGDKE+ G L+GFD YVNMVL+DVTE+ TA+G + T L+ I Sbjct 9 LPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQI 68 Query 118 LLNGNNVSILVPGGDPEEAQ 137 LLNGNN++ILVPGG PE+ + Sbjct 69 LLNGNNIAILVPGGSPEDGE 88 Lambda K H 0.309 0.125 0.343 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22943761524 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40