bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: eggV2
2,483,276 sequences; 915,453,621 total letters
Query= Eten_2441_orf1
Length=326
Score E
Sequences producing significant alignments: (Bits) Value
243090.RB11207 80.9 5e-14
> 243090.RB11207
Length=538
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 115/246 (46%), Gaps = 27/246 (10%)
Query 88 VQLGLLGVAVSACFIILFLLPFKDVLRQVVEHQKGS-----PLTYALTYVVAG-LVVPAP 141
V+ G + + V + +I+ LPF DV+ + GS P+ L Y+VA L VP
Sbjct 14 VRWGSIAIVVVSLLVIIRTLPF-DVVTSAMNEWIGSLGWWGPVVLVLLYIVATVLFVPGT 72
Query 142 LLSVLAGVLMGPSLLAVFVIMCGSMGAACLAFFISRFMLRRFVVNRFVRRSKQLQAIDLA 201
+L++ AG + G L+ V+ GS A LAF ISR++ R V + + +++ AID A
Sbjct 73 ILTLAAGAIFG-LLVGTIVVSIGSTIGAALAFLISRYVARERVA-KLAKDNRRFAAIDRA 130
Query 202 LQKDSVKLVLCTRM--ILPFTFNNYFLGTTPISAATFAVSTLVTGIPFAVLYAIIGGQLQ 259
+++ K+V R+ LPF NY G TPI + +++ + +P LY +G
Sbjct 131 IEEGGWKIVGLLRLSPALPFNLQNYLYGLTPIRFWPYVLTSWIAMLPATFLYVYLG---- 186
Query 260 SLDNALAAKSFELQGADVDVFGFFTMSKRHLEVIGICGGILLCFFVVR-TIKRFAAQVVL 318
+ GA V T ++ + +G+ I + +V R ++ QV
Sbjct 187 -----------HVTGAAVGADRERTTAEWAMLAVGLLATIAVTVYVTRLASQKLDEQVDQ 235
Query 319 EAQEVA 324
+ +E A
Sbjct 236 DQRENA 241
Lambda K H
0.330 0.141 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 118323670014
Database: eggV2
Posted date: Dec 15, 2009 4:47 PM
Number of letters in database: 915,453,621
Number of sequences in database: 2,483,276
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40