bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_2382_orf1 Length=115 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd4_3190 142 2e-33 > 5807.cgd4_3190 Length=106 Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 64/92 (69%), Positives = 77/92 (83%), Gaps = 0/92 (0%) Query 23 RDNPEGGPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVREMWSEVTRG 82 +DNP GPL+LL+ CV N+Q+LVNCRNNRK+L RVKAFDRHCNLLLTD RE+W+E + Sbjct 14 KDNPSEGPLSLLTECVKTNTQILVNCRNNRKILGRVKAFDRHCNLLLTDAREIWTESMKS 73 Query 83 GGKKKQKVVNKDRFISKLFLRGDAVILILKNP 114 G K K +NKDRFISKLF+RGD+VILILK+P Sbjct 74 GKKGSAKYINKDRFISKLFVRGDSVILILKSP 105 Lambda K H 0.321 0.137 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22698934816 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40