bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_2280_orf1 Length=183 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd6_1020 101 1e-20 > 5807.cgd6_1020 Length=240 Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 54/113 (47%), Positives = 70/113 (61%), Gaps = 7/113 (6%) Query 75 TKYLSFNPSVADAVNLDECITE-ERPADA---PMPLQHRWHVWEQIQREAAAADRAADYS 130 +KYLSFN S+ + L +E + P D P+PL H W VWEQ+ E + DYS Sbjct 8 SKYLSFNESIEPNLTLPTACSEVDLPEDLISRPLPLSHEWIVWEQLNVETR---KDLDYS 64 Query 131 QNTRDLASFDTVQTFWQLWAHIPQPSELLGHKRMIRQDSSGKSHVVDALMIFK 183 T+ +A F +VQ FW LW +IPQPSELL KRMIR+ S G VVDA+++FK Sbjct 65 NATKPVARFSSVQQFWWLWHNIPQPSELLKGKRMIRESSDGSKSVVDAVILFK 117 Lambda K H 0.326 0.134 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 38900011563 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40