bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_2140_orf2 Length=241 Score E Sequences producing significant alignments: (Bits) Value 5833.PF08_0132 64.7 2e-09 > 5833.PF08_0132 Length=1397 Score = 64.7 bits (156), Expect = 2e-09, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 32/198 (16%) Query 45 QFAQVQQLLLQKGWFAEPVATEHLLDYYNHLGLNEFYFKAASPKSIADNLLAVIAARALH 104 ++ Q ++LL F++ + + Y+N LG N+F+F+ SP+ I+ ++ +I A+ Sbjct 35 KYEQTKELLKSYNLFSDHLINYSIDFYFNKLGFNKFHFEETSPELISKVVVCIITAKINE 94 Query 105 SVSGDDYFPEIRQRDERSGDVFALAKASLTASGAPRNYLVERAFE---LQFLDMGWGLRA 161 S D YFP + + +F + + + NY +E+ E F DM Sbjct 95 QYSSDKYFPTFEETHDNV--IFIITRVFADDNKTRLNYKMEKKIEEKYFNFSDMS----- 147 Query 162 PPQQQQRQQQQQRQQQRRRKQQMRMQCYRSTGSVFGMDGG-AERLRTYFFQVAKFPKRPE 220 K R++ +RS SVF + E LRTY ++ + + Sbjct 148 -------------------KDCYRLKSFRSVHSVFDKEHTYQEPLRTYILELPTY--NDD 186 Query 221 QLSPKEKDLSLLLDTDFY 238 + E DL L+D +FY Sbjct 187 IIKENETDLKKLMDVNFY 204 Lambda K H 0.320 0.131 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 71080705449 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40