bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_2085_orf1 Length=114 Score E Sequences producing significant alignments: (Bits) Value 5833.PFL0460w 122 3e-27 > 5833.PFL0460w Length=108 Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 56/96 (58%), Positives = 75/96 (78%), Gaps = 0/96 (0%) Query 17 SKDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLL 76 +KD + + D KF+N+K+RVKF GGREV GTL GHDA+ NLVLD TEE++RDP D+ + Sbjct 12 NKDNKFMTDIKKFMNQKIRVKFDGGREVVGTLIGHDAIFNLVLDKTEEYIRDPNDSFVVT 71 Query 77 ETTRSLGLVVARGSAIVLISPVDGVQRIENPFIGVE 112 + TRS+GL+VARG+++ LI+PV+G Q I NPFI E Sbjct 72 DKTRSIGLIVARGTSVALITPVEGTQEISNPFITEE 107 Lambda K H 0.316 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22778399648 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40