bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_2030_orf3 Length=256 Score E Sequences producing significant alignments: (Bits) Value 5833.PF14_0486 428 1e-118 > 5833.PF14_0486 Length=832 Score = 428 bits (1100), Expect = 1e-118, Method: Compositional matrix adjust. Identities = 197/256 (76%), Positives = 225/256 (87%), Gaps = 0/256 (0%) Query 1 VPCGNTCCLVGVDKFLLKSGTLTTYDQAHNIADMKYSVSPVVRVAVKPKDMKELPKLVEG 60 VPCGNTCCLVGVD++++KSGT+TT+ +AHNIADMKYSVSPVVRVAVKPKD K+LPKLV+G Sbjct 438 VPCGNTCCLVGVDQYIVKSGTITTFKEAHNIADMKYSVSPVVRVAVKPKDSKQLPKLVDG 497 Query 61 LKRLSKSDPLVVCTTEESGEHIIAGCGELHVEICLKDLKEEYAQIDIIVSDPVVSYRETV 120 LK+L+KSDPLV+CTT+ESGEHII+GCGELH+EICLKDLK+EYAQID IVSDPVVSYRETV Sbjct 498 LKKLAKSDPLVLCTTDESGEHIISGCGELHIEICLKDLKDEYAQIDFIVSDPVVSYRETV 557 Query 121 TAPSSMTCLSKSPNKHNRLYMTAEPLPEGLPEAIESGKISAKDGPKERANELSEKFDFDK 180 T S++TCL KSPNKHNRL+M A PL EGLPEAI+ K+S KD PK RAN L F +DK Sbjct 558 TEESTITCLGKSPNKHNRLFMKAYPLAEGLPEAIDKNKVSDKDDPKTRANYLHSNFQWDK 617 Query 181 NHAMKIWCFGPETSGPNILVDMTVGVQYLNEIKDHCNSAFQWASKEGVLCEENMRGIRFN 240 N A+KIW FGPET GPN+L D T G+QY+NEIK HC +AFQWASKEGVLCEENMRGI F Sbjct 618 NLALKIWAFGPETIGPNLLTDNTSGIQYMNEIKVHCVAAFQWASKEGVLCEENMRGIEFR 677 Query 241 LTDVTMHADAIHRGAG 256 + DV MHADAIHRGAG Sbjct 678 MLDVHMHADAIHRGAG 693 Lambda K H 0.316 0.133 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 79260779851 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40