bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_2010_orf1 Length=200 Score E Sequences producing significant alignments: (Bits) Value 5833.PFE0895c 117 2e-25 > 5833.PFE0895c Length=547 Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 90/146 (61%), Gaps = 2/146 (1%) Query 46 EEHMGTVIKDSDEWSFIEYMLQLTTRTSRVKLLQVWHVASPHVMNLFERRTAKRLVVYSF 105 + ++ + +DSDEW +EY LQ+ RTSRVKL+Q WH++ V+N F+++ +++LV+ +F Sbjct 13 DNNLIQIFRDSDEWLTLEYFLQVNARTSRVKLVQAWHISPVQVINKFQKKNSEKLVLKTF 72 Query 106 VDASLLDEENTIQDVARRGFKIGPRGMKFVLGNFSLQGIPLLRGDSAKATDPFTLTSPEL 165 +D S LD +NTIQD+ RGF I +G+K +GNF++ G PL + K + + E Sbjct 73 IDTSALDTDNTIQDICARGFCISSKGLKLSIGNFNIPGFPLTSLNKNKTFNQCNELTYE- 131 Query 166 KGSVEEQQRHDRSDFMEAAKSQLLSG 191 + ++ ME +++ LLSG Sbjct 132 -NDPQNSRKKKLRKIMEHSQNSLLSG 156 Lambda K H 0.321 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 47774528022 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40