bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1964_orf4 Length=347 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd8_1430 202 1e-50 > 5807.cgd8_1430 Length=752 Score = 202 bits (515), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 108/273 (39%), Positives = 162/273 (59%), Gaps = 33/273 (12%) Query 18 PADVAKEALTRAY---HKARNFGSSTAIVGVLDGESGIFGLANLGDSSSLVLRRPRVRGS 74 P+ +AK++L K+ G+STA+V D SG G AN+GDS +LVLRR ++ Sbjct 481 PSILAKDSLKVGLDHCEKSGVHGASTALVACFDHYSGNIGFANMGDSGALVLRR--LQFD 538 Query 75 LGQLSLVKKVKEMQHGFNVPFQFAHLPAPEEWDELLQRGLTRLVSIAKQEYDQGDGGRIG 134 G+L +V++VKEMQH FN P+QFA+LP EWDEL+++G +V +AK E + I Sbjct 539 TGKLEIVRRVKEMQHEFNCPYQFANLPPEHEWDELIEKGFHDIVRLAKIEKKNKEDSNIM 598 Query 135 DE----------PSAIQSTSVPVQDGDLIILGTDGLFDNVFDFEALALTGLAVSPHEAQT 184 D+ P Q VP+++GD++ILGTDGLFDN+FDFE +++GL+ SP E++ Sbjct 599 DDKYSMQLACDDPELSQLLEVPLKEGDMVILGTDGLFDNLFDFEITSISGLSFSPIESKL 658 Query 185 LLGDASLATPPEDVARALALAAYWRSLDRDAQTPFSKEARRCCNKQSLPVQTPDGSTGAH 244 T P +A+++AL+AY++SLD ++TPF+ +A+R Sbjct 659 FYNCLDYTTTPMVIAKSIALSAYYKSLDPFSKTPFANQAKR------------------F 700 Query 245 QASPAHAMFLAGLLSGGKEDDITVAAAWVCRKD 277 + +++F + SGGKEDDI+V AWV KD Sbjct 701 YSGGKNSLFESQSFSGGKEDDISVLVAWVVHKD 733 Lambda K H 0.314 0.131 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 129734201706 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40