bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1761_orf1 Length=140 Score E Sequences producing significant alignments: (Bits) Value 5833.PFI0890c 85.5 5e-16 > 5833.PFI0890c Length=252 Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 16/135 (11%) Query 2 ELQDLRWKDSEPKVQILALKVGMTSVFASDGTTEPATLLQVLPATIVQFLEHGKALVASD 61 L+D+ +KD K+QI K+ M S+F+ G PATL++++P I +FL+ GK +A Sbjct 17 HLKDIPYKDELDKIQIRGRKIEMKSIFSPQGDLIPATLIEIMPNVIYRFLDFGKVGIAYG 76 Query 62 DPLHSHRFLRRSVLGVLQRVGSSGSGTSTAGSSSRNSISNSSLAAISAQPAADYVLGQIL 121 PL R++ + +G + +VG + T +++ P ++VLGQI+ Sbjct 77 KPLDESRWILKPEIGQIAKVGCNLKNT----------------CSLTLTPPQNFVLGQII 120 Query 122 DVSALVGAARVNVKG 136 DVS L VNV+G Sbjct 121 DVSYLYNYKYVNVRG 135 Lambda K H 0.313 0.128 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22914837435 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40