bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1724_orf2 Length=150 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd5_100 97.8 9e-20 > 5807.cgd5_100 Length=957 Score = 97.8 bits (242), Expect = 9e-20, Method: Composition-based stats. Identities = 45/75 (60%), Positives = 57/75 (76%), Gaps = 5/75 (6%) Query 26 VVAIDTEHHSYESYKGFICLIQLSTCGSAGAAKDSLVDPFSLFVHLTALNELTANPKILK 85 ++AID EHHS +SYKGF+ LIQLST D ++DPF+LF + LNELTANPKILK Sbjct 303 LLAIDVEHHSNQSYKGFVSLIQLST-----RTHDYIIDPFNLFNEIQMLNELTANPKILK 357 Query 86 ILHGSASDVIWLRRE 100 +LHGS D+IWL+R+ Sbjct 358 VLHGSDYDIIWLQRD 372 Lambda K H 0.319 0.134 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22764965652 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40