bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1687_orf2 Length=144 Score E Sequences producing significant alignments: (Bits) Value 5833.PFE0610c 67.8 1e-10 > 5833.PFE0610c Length=260 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 9/116 (7%) Query 27 RKIKEIVKKEGNFYEIVKLKPLGRNLKSSDESYVHALERQYSSLFQSAAAAAQVAAAAAA 86 +KI EIVK+EGN YEI+K +P+ K +E+YVH+L ++ F A V Sbjct 151 KKIHEIVKEEGNLYEIIKHRPIIN--KVHNETYVHSLIKENPKFFDEVKVANIVEVQ--- 205 Query 87 GSDGARPLDAAIREDQNIPRRKYLNINDFERAAAAAGYGPEVYRHRGRQELSAILF 142 +PL+ A + D +IP RKY + ++ +A A GY V R E + ++ Sbjct 206 ----PQPLNPAYKNDTDIPLRKYFSQDELYQADYAGGYDTNVVLKRCDIEFNKTIY 257 Lambda K H 0.315 0.127 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22567178795 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40