bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1498_orf1 Length=88 Score E Sequences producing significant alignments: (Bits) Value 10090.ENSMUSP00000072717 91.7 6e-18 > 10090.ENSMUSP00000072717 Length=661 Score = 91.7 bits (226), Expect = 6e-18, Method: Composition-based stats. Identities = 43/88 (48%), Positives = 59/88 (67%), Gaps = 0/88 (0%) Query 1 VTLLHIGQKIGYQGVDNGSLHLKNVRIPRKNLLMRFCEVDRDGTYRTTRSRKLLYSTLTF 60 +T+ IG K GY+ +DNG L + N RIPR+N+LM++ +V DGTY S KL Y T+ F Sbjct 221 ITVGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNKLTYGTMVF 280 Query 61 TRKQIIRSAGAHLSRSIVVAIRYSAVRR 88 R ++ SA LS++ +AIRYSAVRR Sbjct 281 VRSFLVGSAAQSLSKACTIAIRYSAVRR 308 Lambda K H 0.327 0.139 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23142708390 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40