bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1353_orf1 Length=179 Score E Sequences producing significant alignments: (Bits) Value 10116.ENSRNOP00000047281 142 4e-33 > 10116.ENSRNOP00000047281 Length=180 Score = 142 bits (359), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 69/156 (44%), Positives = 101/156 (64%), Gaps = 1/156 (0%) Query 24 MQIFVRSYAGESLPVEVSATSTVLELKQHLEARLGVAASLQRLFFGVSAVDDACTLEEAG 83 M+IFV + G+++ ++ + T +K ++ + G+ QRL F +D CTL + Sbjct 26 MKIFVTTLTGKTITLQFEPSGTTENVKAKIQDKEGIPPEEQRLVFAGEQREDGCTLSDYN 85 Query 84 VEEEATLFQSLELLGAGKKRKRKTYTKPKKQKHKNKKVKLAVLKFYKVDDNNKVTRLRKE 143 +++EATL L L G K+RK K+Y PKK+KHK KVKLAVLK+YKVD+N K++RLR+E Sbjct 86 IQKEATLHLGLRLHGGAKERK-KSYPTPKKRKHKRTKVKLAVLKYYKVDENGKISRLRRE 144 Query 144 CPSKTCGSGVFMAQHENRNYCGRCGVTYILNAGGDQ 179 CPS G+GV M H +R+YCG+C +TY N D+ Sbjct 145 CPSDEGGAGVVMGSHFDRHYCGKCCLTYCFNKPEDK 180 Lambda K H 0.316 0.131 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 36430169559 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40