bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1314_orf1 Length=353 Score E Sequences producing significant alignments: (Bits) Value 3702.AT5G03340.1 424 2e-117 > 3702.AT5G03340.1 Length=810 Score = 424 bits (1091), Expect = 2e-117, Method: Compositional matrix adjust. Identities = 194/274 (70%), Positives = 234/274 (85%), Gaps = 3/274 (1%) Query 80 PAASAGNKKADANAAANQQPKKKRSPNRLVVEEAINDDNSVVALNPSRMETLQIFRGDTV 139 P +S K D + A + +K+SPNRLVV+EAINDDNSVV+L+P+ ME LQ+FRGDT+ Sbjct 5 PESSDSKTKKDFSTAILE---RKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTI 61 Query 140 LLRGKMRHDTVCVVLADQDLDEGKIRLNKVVRKNLRVRLGDIVHVSACADCPYGKRIHVL 199 L++GK R DTVC+ LAD+ +E KIR+NKVVR NLRVRLGD++ V C D YGKR+H+L Sbjct 62 LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121 Query 200 PLDDTIEGITGNLFEIYLKPYFMEAYRPVRKNDLFLVRGGFRPVEFKVVGVDPGEFCIVA 259 P+DDT+EG+TGNLF+ YLKPYF+EAYRPVRK DLFLVRGG R VEFKV+ DP E+C+VA Sbjct 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVA 181 Query 260 PDTVIHCEGEPVKREEEERLDEIGYEDIGGCRKQMAQIREMIELPLRHPTLFKTLGVKPP 319 PDT I CEGEPVKRE+EERLDE+GY+D+GG RKQMAQIRE++ELPLRHP LFK++GVKPP Sbjct 182 PDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPP 241 Query 320 RGVLLYGPPGSGKTLIAKAVANETGAFFFLINGP 353 +G+LLYGPPGSGKTLIA+AVANETGAFFF INGP Sbjct 242 KGILLYGPPGSGKTLIARAVANETGAFFFCINGP 275 Lambda K H 0.319 0.138 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 133304867808 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40