bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1313_orf1 Length=93 Score E Sequences producing significant alignments: (Bits) Value 5833.PF10_0186 89.0 4e-17 > 5833.PF10_0186 Length=1740 Score = 89.0 bits (219), Expect = 4e-17, Method: Composition-based stats. Identities = 40/75 (53%), Positives = 54/75 (72%), Gaps = 1/75 (1%) Query 2 CVFHARGKCTRGNNCSFAHSAEELRQLPDLRKTKLCNAFLGGQCSNNNCSYAHGLQELRD 61 C + KC RG NC+FAH ELR PD+RKTKLC +++ G+C++NNC YAH + ELR+ Sbjct 2 CKYALINKCDRGENCTFAHDINELRIKPDMRKTKLCKSYILGKCTDNNCIYAHSVNELRE 61 Query 62 FPGKKGLCRLYREGR 76 GK +C+L+REGR Sbjct 62 V-GKPAICQLHREGR 75 Lambda K H 0.324 0.139 0.463 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22770216990 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40