bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1203_orf4 Length=123 Score E Sequences producing significant alignments: (Bits) Value 5833.PFI0550w 81.6 7e-15 > 5833.PFI0550w Length=3303 Score = 81.6 bits (200), Expect = 7e-15, Method: Composition-based stats. Identities = 38/114 (33%), Positives = 65/114 (57%), Gaps = 0/114 (0%) Query 4 LHLKCQPFDKRNYSTLDRLENHSMAIWTFACCTVGLILGGGFSGSVNLALLVLVVVPVVF 63 LH QPFDKRNY TL++LEN S+ IW ++L S +N +L + + + Sbjct 2733 LHFIFQPFDKRNYFTLNKLENLSLYIWVSTIICTSILLSMNLSKLINFIILFTLFILNLL 2792 Query 64 FVLEVLLNLAFAYFDNVRATKPFFGVPFLGLLFQTLAALSEKRKSKEPLVLFNE 117 F +++L L F DN+R +K + +P LG + L + EK++ +EP++ +++ Sbjct 2793 FFIKLLFCLFFECLDNIRRSKACYHLPVLGTCAKLLGDIMEKKRKREPIIFYDK 2846 Lambda K H 0.329 0.144 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22834639773 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40