bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1182_orf2 Length=448 Score E Sequences producing significant alignments: (Bits) Value 3702.AT1G02520.1 235 2e-60 > 3702.AT1G02520.1 Length=1278 Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 166/462 (35%), Positives = 248/462 (53%), Gaps = 45/462 (9%) Query 9 KNIELGSPDPVTMEQVIAAAKEANADGFITRFPEGYETDCGAYGGQLSGGQKQRIAIARA 68 +NI G + T+E++ AA + ANA FI + P+G +T G +G QLSGGQKQRIAIARA Sbjct 475 ENIAYGKENA-TVEEIKAATELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARA 533 Query 69 LIRRPNILIFDEATSALDTQSERVVQEALDALVQTSKATTLIVAHRLSTIQNADLIIVLE 128 +++ P IL+ DEATSALD +SERVVQEALD ++ TT+IVAHRLST++NAD+I V+ Sbjct 534 ILKDPRILLLDEATSALDAESERVVQEALDRVMVNR--TTVIVAHRLSTVRNADMIAVIH 591 Query 129 PSPQGATVAQQGTHHELMKDTSGLYYHLVSSQIVPTVEETEDDTKPQQVK-----REESE 183 +G V ++G+H EL+KD+ G Y L+ ++E D K ++ R + Sbjct 592 ---RGKMV-EKGSHSELLKDSEGAYSQLIR------LQEINKDVKTSELSSGSSFRNSNL 641 Query 184 VDDIEAAAP--NQTWRESMK--------HVGGSIARASRSLTHS------PNFRTYRIIL 227 +E + N + S+ +G RA + T + P RI Sbjct 642 KKSMEGTSSVGNSSRHHSLNVLGLTTGLDLGSHSQRAGQDETGTASQEPLPKVSLTRIAA 701 Query 228 KH---WAVVLLTLIAAACAGVIFPVFGYSFAHFISTYFSPDPQAIRDGVAKWALILVGLG 284 + V+LL +AAA G IFP+FG + I +F P + RD WA+I V LG Sbjct 702 LNKPEIPVLLLGTVAAAINGAIFPLFGILISRVIEAFFKPAHELKRDS-RFWAIIFVALG 760 Query 285 FAQGIVDAIKIFGIDFCGYKVATALRERAFHQTVHQDIAFFDLTENNAGKLCSILSADVL 344 IV +++ G K+ +R F + VH ++A+FD +N++G + + LSAD Sbjct 761 VTSLIVSPTQMYLFAVAGGKLIRRIRSMCFEKAVHMEVAWFDEPQNSSGTMGARLSADAT 820 Query 345 DVKVGCTGNVVSV-VQVFASFATGLIIAFCGEWRLALVILAFCVLLVPANVIEAK-MGNP 402 ++ G+ +S+ VQ AS A+GLIIAF W LAL+IL L+ ++ K M Sbjct 821 LIR-ALVGDALSLAVQNVASAASGLIIAFTASWELALIILVMLPLIGINGFVQVKFMKGF 879 Query 403 APTHKVRHGDEVKGAPMIMNQATSGIRVVSAFGLEEVFIKSY 444 + K ++ + A + N A IR V++F EE ++ Y Sbjct 880 SADAKSKYEE----ASQVANDAVGSIRTVASFCAEEKVMQMY 917 Lambda K H 0.321 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 187075795405 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40