bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1157_orf1 Length=120 Score E Sequences producing significant alignments: (Bits) Value 5141.NCU01643.1 63.2 2e-09 > 5141.NCU01643.1 Length=1072 Score = 63.2 bits (152), Expect = 2e-09, Method: Composition-based stats. Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 2/68 (2%) Query 45 FDTNSIGPGTHFMFVAESTLRRFIAYKQRSSKVWGAMRAIVFSGADVPGEGEHKLMQLLT 104 FD+NSI PGT FM + ++LR + +YK + W ++ I+ S A VPGEGEHK+M+ + Sbjct 161 FDSNSITPGTPFMDILAASLRYWCSYKLNTDPAWANIKVII-SDATVPGEGEHKIMEFV- 218 Query 105 RGSWASPN 112 R SPN Sbjct 219 RSQRGSPN 226 Lambda K H 0.313 0.121 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23080484097 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40