bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1088_orf1 Length=146 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd6_4620 174 9e-43 > 5807.cgd6_4620 Length=135 Score = 174 bits (440), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 85/135 (62%), Positives = 108/135 (80%), Gaps = 1/135 (0%) Query 13 SGVSASRRKARKAHFGAPSSVRRKIMTAPLCKELRKKFNVRSLPIRKDDEVMIVRGRFHD 72 + VS+S K RK+HF S+ RR++M +PL KELR+K+NVRSLPIRK DEVM++RG HD Sbjct 1 TDVSSSASKCRKSHFATTSTQRRELMASPLSKELRQKYNVRSLPIRKGDEVMVIRGSNHD 60 Query 73 REGKVTQVYRKKFVIHIERISREKANGESL-IGIHPSKVVITKPKLNKDRKALLARKGKA 131 EG VT+V+RKKFVI++ERI+R+K NGES+ IGIHPS VVITK KLN+DR+ LLARK ++ Sbjct 61 YEGVVTRVHRKKFVINVERITRKKTNGESVPIGIHPSNVVITKLKLNRDRRELLARKNRS 120 Query 132 ANKGKYTEKDVAQVD 146 KGKYT D A +D Sbjct 121 TKKGKYTNADAADLD 135 Lambda K H 0.320 0.132 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22393349475 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40