bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_0939_orf1 Length=144 Score E Sequences producing significant alignments: (Bits) Value 5833.PFB0275w 129 3e-29 > 5833.PFB0275w Length=565 Score = 129 bits (324), Expect = 3e-29, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 97/179 (54%), Gaps = 36/179 (20%) Query 1 GVVTTTVAQVQMGALKGWRACFICVGALSCLLGVLISFILEEIPRRRVLRPRMDDSGG-- 58 GVVTTTVA G ++GWR CFI VG LS LL ++++ +E+ PR+ +MD G Sbjct 200 GVVTTTVALKYFGGIRGWRLCFIVVGILSVLLSIIVALFVEDAPRQVRKNKKMDYLDGES 259 Query 59 --------------------------------TGSVSQSPDTWSSFLKAV--FSESVFTP 84 TG QS T+ + V +S+ Sbjct 260 NTNASNNNNNSNNNNINNNINMNNSLDNNNSFTGLSHQSTRTYILYQNIVELLKDSLSKK 319 Query 85 SVLIVILEGLVGTIPWSAFSFNTMFFQYCNMSDLKAAYIMGALLIGSAVGGVLGGLLGD 143 S++I++LEG GTIPW A SFNTMFFQYC +SDL+AA I G LLIGSA+GGV+GG GD Sbjct 320 SIIIILLEGFTGTIPWLALSFNTMFFQYCGLSDLQAAIITGFLLIGSAIGGVVGGHFGD 378 Lambda K H 0.325 0.140 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22567178795 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40