bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_0810_orf1 Length=289 Score E Sequences producing significant alignments: (Bits) Value 3702.AT1G35670.1 175 1e-42 > 3702.AT1G35670.1 Length=495 Score = 175 bits (444), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 97/286 (33%), Positives = 159/286 (55%), Gaps = 8/286 (2%) Query 4 GRGHYMAPEMIRGQYDEKCDIFAVGIIMFQLLSGYHPFFIPGVDNEHTAENKILQDDPCL 63 G +Y+APE+++ Y + D+++ G+I++ LLSG PF+ + E +ILQ Sbjct 189 GSPYYVAPEVLKKCYGPEIDVWSAGVILYILLSGVPPFW---AETESGIFRQILQGKLDF 245 Query 64 NGDVWQCVSMQGKDLLKKLIQKNPRKRSSAQAALEHPWFTLVTTRCACISQLTPSVFEGL 123 D W +S KDL+ K+++++P+KR SA AL HPW +V + A L P+V L Sbjct 246 KSDPWPTISEAAKDLIYKMLERSPKKRISAHEALCHPW--IVDEQAAPDKPLDPAVLSRL 303 Query 124 RSWQSQNRLKQAVLQLLAKELNETDIIQLRKTFEAFDRNGRGTISVDELKQSMHDAGYTV 183 + + N++K+ L+++A+ L+E +I L++ F+ D + GTI+ +ELK + G + Sbjct 304 KQFSQMNKIKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFEELKAGLKRVGSEL 363 Query 184 IESELGQIFKSIDASQQGHIGYNEFISTLLARRVVVREEQLREIFDKFDKKGEGRLTLET 243 +ESE+ + + D G I Y EF++ L + REE L F FDK G G +T++ Sbjct 364 MESEIKSLMDAADIDNSGTIDYGEFLAATLHMNKMEREENLVAAFSYFDKDGSGYITIDE 423 Query 244 LRGILKCSNYGVLKDEELQMIFAEIDKNCDGYVDFYEFCDLMTAAD 289 L+ C+ +G L D L + EID + DG +DF EF +M D Sbjct 424 LQS--ACTEFG-LCDTPLDDMIKEIDLDNDGKIDFSEFTAMMRKGD 466 Lambda K H 0.322 0.138 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 97212566178 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40