bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_0713_orf4 Length=296 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd4_1520 202 9e-51 > 5807.cgd4_1520 Length=353 Score = 202 bits (515), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 110/246 (44%), Positives = 158/246 (64%), Gaps = 25/246 (10%) Query 43 SQTKWEKKEKLQSIAELCQLRSCNSVLYLEQRKNDAL-LHVAKVPLGPTFIARLMNVETL 101 S+ KWEKK+ I+E+ +LRSCN+++ LE R+++ L + VAK P GP+ +++N+ TL Sbjct 98 SEVKWEKKQPFSEISEMSELRSCNNIILLEARRHEELYMWVAKCPNGPSIKFQILNIHTL 157 Query 102 SELRLSGNCLLHSRPLLIFGSEFDRDPH----------------YRVLKELFVQVFGTPR 145 ELRL+GN LL SRPLL F S F+ D + +++K+LF+QVFGTPR Sbjct 158 GELRLAGNSLLGSRPLLSFDSAFESDNYVHNINFSQEQKHLKLPLKLIKDLFIQVFGTPR 217 Query 146 NHPKSKPFFDHAMSFFVSDNRIWFRHYQIAPLVVGEGGDANNPHRQTFIEIGPRFVLDPV 205 HPKSKPF DH +SF D +IWFRHYQIAP D NN +Q IEIGPRFVL+P+ Sbjct 218 YHPKSKPFHDHVISFNFLDGKIWFRHYQIAPTT---ERDHNNVDKQVLIEIGPRFVLEPI 274 Query 206 KILDGSFCGKSLWRNTEFVRTLDLLRPRRLQA-AIAFARRQGQKEKRKLYEEAV---LKD 261 ILDG+F G+ L+RN ++ ++ LLR Q + ++ +R K+KR Y++ + L + Sbjct 275 LILDGTFSGQVLYRNPDY-KSPTLLRNIIKQGYSSSYLQRVQSKQKRSDYKDDLDSSLMN 333 Query 262 APKSKI 267 P+ K+ Sbjct 334 VPEKKM 339 Lambda K H 0.322 0.137 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 101413109161 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40