bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_0676_orf2 Length=152 Score E Sequences producing significant alignments: (Bits) Value 5085.AFUA_1G04040 243 1e-63 > 5085.AFUA_1G04040 Length=142 Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 121/135 (89%), Positives = 127/135 (94%), Gaps = 1/135 (0%) Query 17 FFGKFSKMQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLDDG 76 FF F+ +QIFVKTLTGKTITLDVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQL+DG Sbjct 9 FFCNFT-VQIFVKTLTGKTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 67 Query 77 RTLSDYNIQKESTLHLVLRLRGGIIEPSLALLASKYNCEKKICRKCYARLPPRATNCRKK 136 RTLSDYNIQKESTLHLVLRLRGGIIEPSL LASKYNCEK ICRKCYARLPPRATNCRKK Sbjct 68 RTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKSICRKCYARLPPRATNCRKK 127 Query 137 KCGHTSQLRPKKKPK 151 KCGH++QLRPKKK K Sbjct 128 KCGHSNQLRPKKKLK 142 Lambda K H 0.322 0.139 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22586169780 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40