bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_0610_orf2 Length=136 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd4_140 196 2e-49 > 5807.cgd4_140 Length=1278 Score = 196 bits (498), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 88/135 (65%), Positives = 111/135 (82%), Gaps = 0/135 (0%) Query 2 RVKREGIHCAQLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMD 61 R+K+ I C L GSM+ + R+++LY+FN +LK+ILISLKAGGEGLNLQVA+ ++L+D Sbjct 1144 RLKKANIGCVMLAGSMSILQRNSILYSFNKFPDLKIILISLKAGGEGLNLQVANYVFLLD 1203 Query 62 PWWNPAAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQA 121 PWWNPA E+QA QRAHRIGQ + V +RFI DTIEER+ QLQEKKQLVFDGTVGASN A Sbjct 1204 PWWNPAVELQAFQRAHRIGQKKKVTALRFITKDTIEERMFQLQEKKQLVFDGTVGASNNA 1263 Query 122 MHKLTQEDLRFLFQS 136 ++KL +DL+FLFQ+ Sbjct 1264 LNKLNSDDLKFLFQN 1278 Lambda K H 0.322 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22513421946 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40