bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_0406_orf1 Length=352 Score E Sequences producing significant alignments: (Bits) Value 3702.AT3G61620.1 96.7 1e-18 > 3702.AT3G61620.1 Length=241 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 84/294 (28%), Positives = 126/294 (42%), Gaps = 72/294 (24%) Query 60 EAVSPCGFRADGRLVYECRQLRCRTSVPSAAASDLTTSAEVPDGPAIATAGASGSLASCD 119 E V+P G R DGR E RQ+ AEV G ++ D Sbjct 2 EYVNPEGLRLDGRRFNEMRQI----------------VAEV------------GVVSKAD 33 Query 120 GRAVVSLGCTXVMALVYGPQPSSNMSTLSTSSSNTWSVSCTDNTSAAMQMMHEGKQGLAR 179 G AV +G T V+A VYGP+ N S N +V Sbjct 34 GSAVFEMGNTKVIAAVYGPREIQNKSQ---QKKNDHAV---------------------- 68 Query 180 GELAVPVSVVC--SVGLVDSCVRTRSRYTPDAAEIAAAVRTAAEGIILRRLYTQTRITIS 237 V+C S+ + R R ++ + E++ +R E IL L ++I I Sbjct 69 --------VLCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIF 120 Query 238 ILVLADDGSILSASLIAASLALADAGVAMRDLLPSCTVLLLPQQFPQQQQEPLLLVDPTS 297 + VL DG SA + AA+LALADAG+ MRDL SC+ L PLL ++ Sbjct 121 LQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYL-------NSTPLLDLNYVE 173 Query 298 DETRSGGPCLTLGVTAETNNIVALQLTGRVDRQTYEKMFEVCLRGCLATAECMK 351 D +GG +T+G+ + + + LQ+ ++ +T+E +F + GC A AE ++ Sbjct 174 DS--AGGADVTVGILPKLDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIR 225 Lambda K H 0.319 0.129 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 132709756791 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40