bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_0259_orf2 Length=206 Score E Sequences producing significant alignments: (Bits) Value 5833.PF13_0044 93.2 5e-18 > 5833.PF13_0044 Length=2375 Score = 93.2 bits (230), Expect = 5e-18, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 106/206 (51%), Gaps = 46/206 (22%) Query 1 AMVSAGLRLPLMRRSLMLVTGPRWSKVDFF-PFALKLVKLGFTIYATEGTYNFLRKSLRG 59 ++++ G++LP ++S+++ +K+ F PF L L +GFTIYATEGTY+F K L Sbjct 2210 SLIATGMKLP--KKSILISIKNLNNKLAFEEPFQL-LFLMGFTIYATEGTYDFYSKFL-- 2264 Query 60 CLEAVSEETGSAQRNTEPWSSLAAPVESGEELETPPGEMVLSEIEKQIISV-SKDGNSAE 118 E+ + GS + +++I V +K+ + Sbjct 2265 --ESFNVNKGS-------------------------------KFHQRLIKVHNKNAENIS 2291 Query 119 AGGQDLLTATDVIKRGLVELVINVPGRAHHRSVSAGYIIRRTAVDAGVPLLTDLKLASFF 178 TD+I VE+VIN+ + S GY IRR A D VPL+T++KL S F Sbjct 2292 P------NTTDLIMNHKVEMVINITDTLKTKVSSNGYKIRRLASDFQVPLITNMKLCSLF 2345 Query 179 VESLSKKISRERGRKRFWEVRSWDEY 204 ++SL +K SR++ RK F+ ++S+DEY Sbjct 2346 IDSLYRKFSRQKERKSFYTIKSYDEY 2371 Lambda K H 0.317 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 51449491716 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40