bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_0208_orf4 Length=253 Score E Sequences producing significant alignments: (Bits) Value 5833.MAL13P1.234 148 2e-34 > 5833.MAL13P1.234 Length=5987 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 89/244 (36%), Positives = 126/244 (51%), Gaps = 50/244 (20%) Query 7 LVGSLVKPLDRVGQAVSDVTRGIHAEVSKPMGALKLINKRLRNPRMI-GEQGQVRPYDET 65 + GSLVKPLD+VGQAVSDVTRGI AEVSKP+G K KR R PRM+ GE G+++ Y+ Sbjct 5789 VAGSLVKPLDKVGQAVSDVTRGIKAEVSKPIGGHKYKTKRHRKPRMLWGEYGKLKEYNIN 5848 Query 66 EAQLRQSLGLAVLRPMQKCMTVLEQDTPQRCHLAVLFYPQDIFLVDLKGGLQGTQQGTSR 125 EA+LR+ LGL + + KC+TV +Q+ H A+L YP+ I +L ++ Sbjct 5849 EAELRECLGLKFSKNIMKCLTVHKQENHPPSHYALLLYPKVIIYANLYA------NTNAQ 5902 Query 126 RGSSAGDEAGGQVHVLWHVSVADIREVKAGSHGVIVRTSQSSSGAQPQTEAGLGRASTLG 185 + E + V+W + + DI E++A SHG+IVRT+ S++ Sbjct 5903 KNDFLLSEKKTDI-VIWSIKIEDITEIRASSHGLIVRTNTSTN----------------- 5944 Query 186 IMAKTQAGRRSTQPSVTTGAQRDIMQTFHIPCANAALANEVYRELLETQRGSATIVELGA 245 + IPC NA L N++YREL ++ + V LGA Sbjct 5945 -------------------------TVYKIPCNNAILINKIYRELHNSKNSINSTVILGA 5979 Query 246 NRRA 249 N A Sbjct 5980 NNSA 5983 Lambda K H 0.316 0.131 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 77445647488 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40