bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: eggV2
2,483,276 sequences; 915,453,621 total letters
Query= Eten_0202_orf1
Length=251
Score E
Sequences producing significant alignments: (Bits) Value
5833.PF10_0144 360 2e-98
> 5833.PF10_0144
Length=304
Score = 360 bits (925), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 175/250 (70%), Positives = 207/250 (82%), Gaps = 3/250 (1%)
Query 4 PKMDPQALKKLGGFGAV--ALAGVAG-AVGLFNTSLYNVEAGHRAIVYNRLRGISSKIYF 60
P D +KKLG GA A+ GV F SLYNVEAG RAI YNR+ G+S+KIY
Sbjct 26 PNFDIHQVKKLGKLGATIGAIIGVTSFGSWFFKNSLYNVEAGKRAIKYNRIFGLSNKIYG 85
Query 61 EGTHFCFPFLERPIIYDVRSRPRVLTSLSGSRDLQMVSITCRVLSRPDEGRLPEVYRQLG 120
EGTHF PF ER IIYDVR++PRVL SL+GSRDLQMV+ITCRVLSRP+E +L E+YR LG
Sbjct 86 EGTHFLIPFFERSIIYDVRTKPRVLMSLTGSRDLQMVNITCRVLSRPNEKKLVEIYRTLG 145
Query 121 MDYDEKVLPSIINETLKSIISQFNASQLITQRDALSSRIREQLVRRARDFNILLDDVSLT 180
+YDEKVLPSIINE LKS+++Q+NASQLITQR+ +S +REQLV+RA+DFNILLDD S+T
Sbjct 146 KEYDEKVLPSIINEVLKSVVAQYNASQLITQREVVSKSVREQLVQRAKDFNILLDDASIT 205
Query 181 HLSFSPEYERAVEAKQVAQQQAERSKYVVLRALEEKKSTIIKAQGEAEAAKLIGSAIKSN 240
HLSFS EYE+AVEAKQVAQQ+AERSKYVVL+A +EKKSTIIKAQGEAE AKLIG A+K N
Sbjct 206 HLSFSNEYEKAVEAKQVAQQEAERSKYVVLKAEQEKKSTIIKAQGEAEVAKLIGLAVKDN 265
Query 241 PAFLELRRID 250
PAF+EL++I+
Sbjct 266 PAFMELKKIE 275
Lambda K H
0.320 0.135 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 76235559246
Database: eggV2
Posted date: Dec 15, 2009 4:47 PM
Number of letters in database: 915,453,621
Number of sequences in database: 2,483,276
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40