bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_0189_orf3 Length=224 Score E Sequences producing significant alignments: (Bits) Value 5691.Tb927.5.1280 168 1e-40 > 5691.Tb927.5.1280 Length=257 Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 100/222 (45%), Positives = 126/222 (56%), Gaps = 16/222 (7%) Query 2 AAAKAPLLIAVSKTHPPAAVAAAAATGHRHFGENYVAELVEKAQKLPEDYHWHLIGKLQT 61 +A +A L+AVSKT PA + A GHR FGENYV E+VEKA LP D HWH IG LQ+ Sbjct 38 SADRAVKLVAVSKTKSPACLQALYDCGHRDFGENYVQEVVEKAAVLPGDIHWHFIGHLQS 97 Query 62 NKVKTLVAGVRNLYSVDSVDSVRLAEVLQRE--TKKANRHLNVLVQVNAGGEPQKNGVLG 119 NKVK L++GV L V +VDS LA+ L + + R L+V VQVN GE K+GV Sbjct 98 NKVKELLSGVSGLQIVQTVDSESLAQKLDSGCVSYRGGRPLDVYVQVNTSGETTKSGV-- 155 Query 120 DDWNSTKHLSLSLVYYILDKCPNLKFRGFMTVAPQDVDEALSTFKRMKELKEEAARDEKI 179 ++ L +I KCPNL+ G MT+ D F+ + +EE + Sbjct 156 ----EPGSATVELARHISTKCPNLRLTGLMTIGMPDYTSRPENFECLLRCREE------V 205 Query 180 AAALN--GEDLELSMGMSRDMQTAVENGSTQVRIGTAIFGAR 219 AAALN L LSMGMS D A+ GST VR+GT +FG R Sbjct 206 AAALNLDATTLALSMGMSGDYTNAIRMGSTVVRVGTGLFGQR 247 Lambda K H 0.315 0.130 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 61611077973 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40