bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_0123_orf2 Length=273 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd4_3160 376 4e-103 > 5807.cgd4_3160 Length=262 Score = 376 bits (966), Expect = 4e-103, Method: Compositional matrix adjust. Identities = 180/262 (68%), Positives = 217/262 (82%), Gaps = 2/262 (0%) Query 14 MAIGKNKRMSKGKKGGKKKIGDPFLKKEWYDLKAPSLFQQRNFGKTLVTKSAGTKLAVDS 73 MAIGKNKR+SKG+KGG+KKI DP +KE+YDL+APS F+ RNFG T+ +K+ GTKLAVD+ Sbjct 1 MAIGKNKRISKGRKGGRKKIIDPLSRKEFYDLRAPSTFKVRNFGTTIASKNQGTKLAVDA 60 Query 74 LRGRVYEVNLADLNLDEDQGFRKIKLQCEEIQGRSCLTDFHGMNITRDKLCSLIRKWHSL 133 LR RVYEV+LADLN DEDQ FRKIKLQCE+IQGR+CLT+FHGM++TRDKLCSLIRK+ +L Sbjct 61 LRHRVYEVSLADLNNDEDQAFRKIKLQCEDIQGRTCLTEFHGMDMTRDKLCSLIRKYQTL 120 Query 134 IEAFVDVQTVDGYTLRMFCIAFTERRPNQIKSTCYARSSQIRAIRKKMVSIMAAEASKCQ 193 IEA +V+T DGY LR+FCIAFT R +Q+KSTCYA++SQIR IRKKMV I+ AEA Sbjct 121 IEAHCNVKTSDGYVLRLFCIAFTRRMADQVKSTCYAQTSQIRQIRKKMVEIITAEAEGTT 180 Query 194 LRDLVKKFIPESIGKSIEAACRSIFPLQNVLIRKVKVIKKPKFDLTKLMELH--GETSED 251 LRDLVKKFIPESIGK IE ACR IFPLQ+V IRKVKV+ KP FD+++LME H + E+ Sbjct 181 LRDLVKKFIPESIGKEIEKACRHIFPLQHVFIRKVKVLSKPSFDVSRLMESHVGADGVEE 240 Query 252 VGKKVATESAAAQNTLSAEVKA 273 G KV +ES A N L+AE+KA Sbjct 241 KGTKVVSESNQATNLLTAEMKA 262 Lambda K H 0.319 0.133 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 88576444215 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40