bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_0056_orf3 Length=225 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd6_4190 358 9e-98 > 5807.cgd6_4190 Length=222 Score = 358 bits (918), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 165/222 (74%), Positives = 190/222 (85%), Gaps = 0/222 (0%) Query 4 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKLRIYDVGRKKADVEEFPGVVHLVSDEYEQI 63 M RRPARCYRYC+ KPYPKSRFCRGVPD K+RIYDVGRKKA+ + FP V+HL+SDEYEQI Sbjct 1 MARRPARCYRYCRGKPYPKSRFCRGVPDPKIRIYDVGRKKAECDAFPAVIHLISDEYEQI 60 Query 64 SSEALEAARVCANKYMIKHCGKDNFHLRMRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 123 SSEALEAAR+ ANKYMIK CGKDNFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGA+G Sbjct 61 SSEALEAARISANKYMIKFCGKDNFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAYG 120 Query 124 KPTGLVARVNIGQILMSIRTKESSVNIAALALRRAAFKFPGRQKVFTSNKWGFTPFTREE 183 KPTG ARVNIGQ+LMSIR KE A +ALRRA +KFPGRQKV S+KWGFT FT+EE Sbjct 121 KPTGTAARVNIGQVLMSIRCKEDKTQTAVMALRRAKYKFPGRQKVVVSDKWGFTKFTKEE 180 Query 184 YKKWQAEGRIVSDGVCAKWLAKKGPLADTFPLAKDIQLPVEN 225 Y K+QAEGRIV DGV K+++ +G L+ FP A +I +P+++ Sbjct 181 YLKYQAEGRIVPDGVNCKYISCRGSLSRIFPEAANINIPLDD 222 Lambda K H 0.324 0.138 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 61360267097 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40