bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
164,496 sequences; 82,071,388 total letters
Query= Emax_2860_orf2
Length=56
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_016400 meiotic recombination protein DMC1-like prot... 107 1e-23
pfa:MAL8P1.76 meiotic recombination protein dmc1-like protein;... 97.4 1e-20
cpv:cgd7_1690 meiotic recombination protein DMC1-like protein ... 95.1 4e-20
sce:YER179W DMC1, ISC2; Dmc1p; K10872 meiotic recombination pr... 93.6 1e-19
ath:AT3G22880 DMC1; DMC1 (DISRUPTION OF MEIOTIC CONTROL 1); AT... 82.8 3e-16
dre:553953 dmc1, MGC136628, zgc:136628; DMC1 dosage suppressor... 81.6 6e-16
mmu:19361 Rad51, AV304093, Rad51a, Reca; RAD51 homolog (S. cer... 78.6 4e-15
mmu:13404 Dmc1, Dmc1h, MGC151144, Mei11, sgdp; DMC1 dosage sup... 78.6 5e-15
hsa:11144 DMC1, DMC1H, HsLim15, LIM15, MGC150472, MGC150473, d... 77.8 7e-15
dre:406487 rad51, wu:fb38e12, zgc:77754; RAD51 homolog (RecA h... 77.8 7e-15
cel:Y43C5A.6 rad-51; RADiation sensitivity abnormal/yeast RAD-... 77.8 7e-15
xla:380251 rad51-b, MGC130792, MGC52570, brcc5, rad51, rad51a,... 77.8 9e-15
xla:397726 rad51-a, MGC84850, brcc5, rad51, rad51a, reca, xrad... 77.0 1e-14
ath:AT5G20850 ATRAD51; ATP binding / DNA binding / DNA-depende... 76.6 2e-14
sce:YER095W RAD51, MUT5; Rad51p; K04482 DNA repair protein RAD51 76.3 2e-14
cpv:cgd5_410 Rad51 ; K04482 DNA repair protein RAD51 74.3 9e-14
tpv:TP04_0170 meiotic recombination protein DMC1; K04482 DNA r... 72.8 2e-13
hsa:5888 RAD51, BRCC5, HRAD51, HsRad51, HsT16930, RAD51A, RECA... 72.8 3e-13
tgo:TGME49_072900 DNA repair protein, putative (EC:3.6.3.8); K... 71.2 7e-13
pfa:PF11_0087 rad51; Rad51 homolog; K04482 DNA repair protein ... 68.6 4e-12
bbo:BBOV_II003540 18.m06297; Rad51 protein; K04482 DNA repair ... 67.0 1e-11
tpv:TP04_0230 DNA repair protein Rad51; K04482 DNA repair prot... 67.0 1e-11
dre:406721 rad51l1, wu:fd07f04, zgc:56581; RAD51-like 1 (S. ce... 55.1 5e-08
ath:AT2G45280 ATRAD51C; ATP binding / damaged DNA binding / pr... 55.1 5e-08
sce:YDR004W RAD57; Protein that stimulates strand exchange by ... 54.7 6e-08
hsa:5890 RAD51L1, MGC34245, R51H2, RAD51B, REC2, hREC2; RAD51-... 53.9 1e-07
mmu:19363 Rad51l1, AI553500, R51H2, Rad51b, mREC2; RAD51-like ... 52.4 4e-07
dre:450081 rad51c, zgc:101596; rad51 homolog C (S. cerevisiae)... 49.7 2e-06
xla:379577 xrcc3, MGC69118; X-ray repair complementing defecti... 49.3 3e-06
mmu:114714 Rad51c, R51H3, Rad51l2; RAD51 homolog c (S. cerevis... 48.5 5e-06
dre:541414 xrcc3, im:7142103, si:dkey-11b8.1, zgc:101608; X-ra... 48.1 6e-06
ath:AT5G57450 XRCC3; XRCC3; ATP binding / damaged DNA binding ... 47.0 2e-05
hsa:7517 XRCC3, CMM6; X-ray repair complementing defective rep... 45.1 6e-05
mmu:74335 Xrcc3, 4432412E01Rik, AI182522, AW537713; X-ray repa... 44.7 8e-05
ath:AT2G28560 RAD51B; RAD51B; recombinase; K10869 RAD51-like p... 43.1 2e-04
cpv:cgd2_4070 hypothetical protein 33.1 0.22
mmu:19364 Rad51l3, DKFZp586D0122, R51H3, Rad51d, Trad-d2, Trad... 31.2 0.72
dre:404608 MGC77165; zgc:77165; K10871 RAD51-like protein 3 30.4
ath:AT1G07745 RAD51D; RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D);... 30.0 1.9
cpv:cgd2_3880 hypothetical protein 30.0 2.0
hsa:5892 RAD51L3, R51H3, RAD51D, TRAD; RAD51-like 3 (S. cerevi... 29.6 2.1
xla:444788 rad51l3, MGC82048; RAD51-like 3; K10871 RAD51-like ... 29.3 3.4
cpv:cgd4_2050 hypothetical protein 28.1 7.8
eco:b2699 recA, ECK2694, JW2669, lexB, recH, rnmB, srf, tif, u... 27.7 8.4
tpv:TP04_0453 hypothetical protein 27.7 8.6
> tgo:TGME49_016400 meiotic recombination protein DMC1-like protein,
putative (EC:2.7.11.1); K10872 meiotic recombination
protein DMC1
Length=349
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/56 (83%), Positives = 52/56 (92%), Gaps = 0/56 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEAT 56
DQLLGGG E+MSI E+FGENRCGKTQ+CHT+CVTAQLPR+M GGCGKVCYIDTE T
Sbjct 120 DQLLGGGFETMSITELFGENRCGKTQLCHTVCVTAQLPRDMKGGCGKVCYIDTEGT 175
> pfa:MAL8P1.76 meiotic recombination protein dmc1-like protein;
K10872 meiotic recombination protein DMC1
Length=347
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/56 (78%), Positives = 48/56 (85%), Gaps = 0/56 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEAT 56
DQ LGGGIESM I E+FGENRCGKTQ+CHTL VTAQLP+ + GG GKVCYIDTE T
Sbjct 118 DQTLGGGIESMCITELFGENRCGKTQVCHTLAVTAQLPKSLNGGNGKVCYIDTEGT 173
> cpv:cgd7_1690 meiotic recombination protein DMC1-like protein
; K10872 meiotic recombination protein DMC1
Length=342
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/56 (78%), Positives = 47/56 (83%), Gaps = 0/56 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEAT 56
D++L GG ESM I EIFGENRCGKTQICHTLCV AQLP EM GG GKVC+IDTE T
Sbjct 113 DKMLMGGFESMCITEIFGENRCGKTQICHTLCVAAQLPLEMNGGNGKVCFIDTEGT 168
> sce:YER179W DMC1, ISC2; Dmc1p; K10872 meiotic recombination
protein DMC1
Length=334
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/56 (76%), Positives = 47/56 (83%), Gaps = 0/56 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEAT 56
D +LGGGI +MSI E+FGE RCGKTQ+ HTLCVT QLPREMGGG GKV YIDTE T
Sbjct 104 DSILGGGIMTMSITEVFGEFRCGKTQMSHTLCVTTQLPREMGGGEGKVAYIDTEGT 159
> ath:AT3G22880 DMC1; DMC1 (DISRUPTION OF MEIOTIC CONTROL 1);
ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA
binding / nucleoside-triphosphatase/ nucleotide binding /
protein binding; K10872 meiotic recombination protein DMC1
Length=344
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 42/56 (75%), Gaps = 0/56 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEAT 56
D LLGGGIE+ +I E FGE R GKTQ+ HTLCVT QLP M GG GKV YIDTE T
Sbjct 116 DDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGT 171
> dre:553953 dmc1, MGC136628, zgc:136628; DMC1 dosage suppressor
of mck1 homolog, meiosis-specific homologous recombination
(yeast); K10872 meiotic recombination protein DMC1
Length=342
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 44/56 (78%), Gaps = 0/56 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEAT 56
D+LLGGG+ESM+I E FGE R GKTQ+ HTLCVTAQLP E G GKV +IDTE T
Sbjct 111 DKLLGGGVESMAITEAFGEFRTGKTQLSHTLCVTAQLPGEYGYTGGKVIFIDTENT 166
> mmu:19361 Rad51, AV304093, Rad51a, Reca; RAD51 homolog (S. cerevisiae);
K04482 DNA repair protein RAD51
Length=339
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 43/56 (76%), Gaps = 0/56 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEAT 56
D+LL GGIE+ SI E+FGE R GKTQICHTL VT QLP + GGG GK YIDTE T
Sbjct 110 DKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT 165
> mmu:13404 Dmc1, Dmc1h, MGC151144, Mei11, sgdp; DMC1 dosage suppressor
of mck1 homolog, meiosis-specific homologous recombination
(yeast); K10872 meiotic recombination protein DMC1
Length=340
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 43/56 (76%), Gaps = 0/56 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEAT 56
D+LLGGGIESM+I E FGE R GKTQ+ HTLCVTAQLP G GK+ +IDTE T
Sbjct 109 DKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGTGGYSGGKIIFIDTENT 164
> hsa:11144 DMC1, DMC1H, HsLim15, LIM15, MGC150472, MGC150473,
dJ199H16.1; DMC1 dosage suppressor of mck1 homolog, meiosis-specific
homologous recombination (yeast); K10872 meiotic recombination
protein DMC1
Length=340
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 43/56 (76%), Gaps = 0/56 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEAT 56
D+LLGGGIESM+I E FGE R GKTQ+ HTLCVTAQLP G GK+ +IDTE T
Sbjct 109 DKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 164
> dre:406487 rad51, wu:fb38e12, zgc:77754; RAD51 homolog (RecA
homolog, E. coli) (S. cerevisiae); K04482 DNA repair protein
RAD51
Length=338
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 43/56 (76%), Gaps = 0/56 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEAT 56
D+LL GGIE+ SI E+FGE R GKTQ+CHTL VT QLP + GGG GK YIDTE T
Sbjct 109 DKLLQGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKAMYIDTEGT 164
> cel:Y43C5A.6 rad-51; RADiation sensitivity abnormal/yeast RAD-related
family member (rad-51); K04482 DNA repair protein
RAD51
Length=395
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 44/56 (78%), Gaps = 0/56 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEAT 56
D+LLGGGIE+ SI E++GE R GKTQ+CH+L V QLP +MGGG GK YIDT AT
Sbjct 164 DRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYIDTNAT 219
> xla:380251 rad51-b, MGC130792, MGC52570, brcc5, rad51, rad51a,
reca, xrad51; RAD51 homolog (RecA homolog); K04482 DNA repair
protein RAD51
Length=336
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 43/56 (76%), Gaps = 0/56 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEAT 56
D+LL GGIE+ SI E+FGE R GKTQ+CHTL VT QLP + GGG GK YIDTE T
Sbjct 107 DKLLQGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGT 162
> xla:397726 rad51-a, MGC84850, brcc5, rad51, rad51a, reca, xrad51;
RAD51 homolog (RecA homolog); K04482 DNA repair protein
RAD51
Length=336
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 43/56 (76%), Gaps = 0/56 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEAT 56
D+LL GG+E+ SI E+FGE R GKTQ+CHTL VT QLP + GGG GK YIDTE T
Sbjct 107 DKLLQGGVETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGT 162
> ath:AT5G20850 ATRAD51; ATP binding / DNA binding / DNA-dependent
ATPase/ damaged DNA binding / nucleoside-triphosphatase/
nucleotide binding / protein binding / sequence-specific DNA
binding; K04482 DNA repair protein RAD51
Length=342
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 43/56 (76%), Gaps = 0/56 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEAT 56
D++L GGIE+ SI E++GE R GKTQ+CHTLCVT QLP + GGG GK YID E T
Sbjct 113 DKVLEGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMYIDAEGT 168
> sce:YER095W RAD51, MUT5; Rad51p; K04482 DNA repair protein RAD51
Length=400
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 44/56 (78%), Gaps = 0/56 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEAT 56
D LLGGG+E+ SI E+FGE R GK+Q+CHTL VT Q+P ++GGG GK YIDTE T
Sbjct 168 DTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT 223
> cpv:cgd5_410 Rad51 ; K04482 DNA repair protein RAD51
Length=347
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 42/56 (75%), Gaps = 0/56 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEAT 56
D+LL GGIE+ SI EIFGE R GKTQ+CHTL VT QLP E GG GK +IDTE T
Sbjct 116 DRLLQGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPVEHKGGEGKCLWIDTEGT 171
> tpv:TP04_0170 meiotic recombination protein DMC1; K04482 DNA
repair protein RAD51
Length=346
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 44/58 (75%), Gaps = 6/58 (10%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQL--PREMGGGCGKVCYIDTEAT 56
++LL GGIE+MSI E+FGENR GKTQICHT+ VT+Q+ P E KVCYIDTE T
Sbjct 119 NRLLNGGIETMSITELFGENRTGKTQICHTISVTSQIINPTE----PFKVCYIDTENT 172
> hsa:5888 RAD51, BRCC5, HRAD51, HsRad51, HsT16930, RAD51A, RECA;
RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae); K04482
DNA repair protein RAD51
Length=340
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 39/51 (76%), Gaps = 0/51 (0%)
Query 6 GGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEAT 56
GGIE+ SI E+FGE R GKTQICHTL VT QLP + GGG GK YIDTE T
Sbjct 116 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT 166
> tgo:TGME49_072900 DNA repair protein, putative (EC:3.6.3.8);
K04482 DNA repair protein RAD51
Length=354
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 41/56 (73%), Gaps = 0/56 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEAT 56
D LL GGIE+ ++ E+FGE R GKTQ+CHTL VT QLP E GG GK +IDTE T
Sbjct 123 DSLLKGGIETGNLTELFGEFRTGKTQLCHTLAVTCQLPIEQAGGEGKCLWIDTEGT 178
> pfa:PF11_0087 rad51; Rad51 homolog; K04482 DNA repair protein
RAD51
Length=350
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 40/56 (71%), Gaps = 0/56 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEAT 56
D LL GGIE+ I E+FGE R GK+Q+CHTL +T QLP E GG GK +IDTE T
Sbjct 120 DALLKGGIETGGITELFGEFRTGKSQLCHTLAITCQLPIEQSGGEGKCLWIDTEGT 175
> bbo:BBOV_II003540 18.m06297; Rad51 protein; K04482 DNA repair
protein RAD51
Length=346
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 39/54 (72%), Gaps = 0/54 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTE 54
D LL GGIES SI EI G+ GKTQ+CHTL +T+QLP E GG GK +IDT+
Sbjct 113 DALLQGGIESGSITEIIGDFSTGKTQLCHTLAITSQLPIEQNGGEGKCLWIDTQ 166
> tpv:TP04_0230 DNA repair protein Rad51; K04482 DNA repair protein
RAD51
Length=343
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 41/56 (73%), Gaps = 0/56 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEAT 56
D+LL GG+E+ SI EI GE + GK+Q+CHTL VT QLP E GG GK ++D+E T
Sbjct 113 DKLLQGGVETGSITEIIGEFKTGKSQLCHTLAVTCQLPVEQSGGEGKCLWVDSEGT 168
> dre:406721 rad51l1, wu:fd07f04, zgc:56581; RAD51-like 1 (S.
cerevisiae); K10869 RAD51-like protein 1
Length=373
Score = 55.1 bits (131), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 0/55 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEA 55
D+LL GG+ ++ E+ G + CGKTQ+C L V A LP+ +GG V YIDTE+
Sbjct 87 DRLLHGGLPRGALTEVTGPSGCGKTQLCMMLSVLATLPKSLGGLDSGVIYIDTES 141
> ath:AT2G45280 ATRAD51C; ATP binding / damaged DNA binding /
protein binding / recombinase/ single-stranded DNA binding
Length=363
Score = 55.1 bits (131), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 33/56 (58%), Gaps = 0/56 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEAT 56
D +LGGGI + EI G GKTQI L V Q+PRE GG GK YIDTE +
Sbjct 113 DNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGGKAIYIDTEGS 168
> sce:YDR004W RAD57; Protein that stimulates strand exchange by
stabilizing the binding of Rad51p to single-stranded DNA;
involved in the recombinational repair of double-strand breaks
in DNA during vegetative growth and meiosis; forms heterodimer
with Rad55p; K10958 DNA repair protein RAD57
Length=460
Score = 54.7 bits (130), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 0/55 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEA 55
D+LLGGGI + I EIFGE+ GK+Q+ L ++ QL GG GK YI TE
Sbjct 108 DELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITTEG 162
> hsa:5890 RAD51L1, MGC34245, R51H2, RAD51B, REC2, hREC2; RAD51-like
1 (S. cerevisiae); K10869 RAD51-like protein 1
Length=350
Score = 53.9 bits (128), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 33/55 (60%), Gaps = 0/55 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEA 55
D+ L GG+ S+ EI G CGKTQ C + + A LP MGG G V YIDTE+
Sbjct 91 DEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTES 145
> mmu:19363 Rad51l1, AI553500, R51H2, Rad51b, mREC2; RAD51-like
1 (S. cerevisiae); K10869 RAD51-like protein 1
Length=350
Score = 52.4 bits (124), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 33/55 (60%), Gaps = 0/55 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEA 55
D+ L GG+ S+ EI G CGKTQ C + V A LP +GG G V YIDTE+
Sbjct 91 DEALHGGVPCGSLTEITGPPGCGKTQFCIMMSVLATLPTSLGGLEGAVVYIDTES 145
> dre:450081 rad51c, zgc:101596; rad51 homolog C (S. cerevisiae);
K10870 RAD51-like protein 2
Length=362
Score = 49.7 bits (117), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 0/56 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEAT 56
D +GGG+ EI G GKTQ+C L V Q+P GG GK YIDTE +
Sbjct 94 DDAIGGGVPVGKTTEICGAPGVGKTQLCMQLAVDVQIPVFFGGLGGKALYIDTEGS 149
> xla:379577 xrcc3, MGC69118; X-ray repair complementing defective
repair in Chinese hamster cells 3; K10880 DNA-repair protein
XRCC3
Length=350
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 30/54 (55%), Gaps = 0/54 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTE 54
D L GGI + I EI GE+ GKTQI LC++ Q P E GG YI TE
Sbjct 90 DNFLRGGIPLVGITEIAGESSAGKTQIGLQLCLSVQYPVEYGGLASGAVYICTE 143
> mmu:114714 Rad51c, R51H3, Rad51l2; RAD51 homolog c (S. cerevisiae);
K10870 RAD51-like protein 2
Length=366
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 0/54 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTE 54
D +LGGGI M E+ G GKTQ+C L V Q+P GG G+ +IDTE
Sbjct 99 DNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTE 152
> dre:541414 xrcc3, im:7142103, si:dkey-11b8.1, zgc:101608; X-ray
repair complementing defective repair in Chinese hamster
cells 3; K10880 DNA-repair protein XRCC3
Length=352
Score = 48.1 bits (113), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 0/54 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTE 54
D L+ GG+ I E+ GE+ GKTQ C LC++ Q P+E GG YI TE
Sbjct 90 DGLMRGGLPLRGITELAGESAAGKTQFCLQLCLSVQYPQEHGGLNSGAVYICTE 143
> ath:AT5G57450 XRCC3; XRCC3; ATP binding / damaged DNA binding
/ protein binding / single-stranded DNA binding; K10880 DNA-repair
protein XRCC3
Length=304
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 0/54 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTE 54
D L GGI S+ EI E+ CGKTQ+C L + QLP GG G Y+ +E
Sbjct 29 DGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPISHGGLNGSSLYLHSE 82
> hsa:7517 XRCC3, CMM6; X-ray repair complementing defective repair
in Chinese hamster cells 3; K10880 DNA-repair protein
XRCC3
Length=346
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 0/54 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTE 54
D LL GG+ I E+ G + GKTQ+ LC+ Q PR+ GG YI TE
Sbjct 90 DALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYICTE 143
> mmu:74335 Xrcc3, 4432412E01Rik, AI182522, AW537713; X-ray repair
complementing defective repair in Chinese hamster cells
3; K10880 DNA-repair protein XRCC3
Length=349
Score = 44.7 bits (104), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 0/54 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTE 54
DQ LGGG+ I + G + GKTQ+ LC+ Q PR+ GG YI TE
Sbjct 90 DQFLGGGLPLEGITGLAGCSSAGKTQLALQLCLAVQFPRQYGGLEAGAVYICTE 143
> ath:AT2G28560 RAD51B; RAD51B; recombinase; K10869 RAD51-like
protein 1
Length=370
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 0/55 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEA 55
D L GGI + E+ G GK+Q C L ++A P GG G+V YID E+
Sbjct 92 DDTLCGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYIDVES 146
> cpv:cgd2_4070 hypothetical protein
Length=304
Score = 33.1 bits (74), Expect = 0.22, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPR---------EMGGGCGKVCYI 51
D+ GGI + EI GE GKTQ C TL +T+ L R E+ G VC +
Sbjct 46 DKAFNGGIPKRILFEITGEAGTGKTQWCLTL-ITSVLLRNLDFSKVMGELNSDIGIVCVL 104
Query 52 DTE 54
TE
Sbjct 105 YTE 107
> mmu:19364 Rad51l3, DKFZp586D0122, R51H3, Rad51d, Trad-d2, Trad-d3,
Trad-d4, Trad-d6, Trad-d7; RAD51-like 3 (S. cerevisiae);
K10871 RAD51-like protein 3
Length=329
Score = 31.2 bits (69), Expect = 0.72, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDT 53
D+LL G+ + + EI G GKTQ+C LCV A + + V Y+D+
Sbjct 90 DKLLDAGLYTGEVTEIVGGPGSGKTQVC--LCVAANVAHSLQ---QNVLYVDS 137
> dre:404608 MGC77165; zgc:77165; K10871 RAD51-like protein 3
Length=327
Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCV--TAQLPREMGGGCGKVCYIDTEA 55
D+LL G+ + I E+ G GKTQ+C ++ V + QL + V YIDT+
Sbjct 90 DKLLDSGLYTGEITELTGSPGSGKTQVCFSVAVNISHQLKQ-------TVVYIDTKG 139
> ath:AT1G07745 RAD51D; RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D);
ATP binding / DNA binding / DNA-dependent ATPase
Length=304
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDT 53
D LL GG + E+ G + GKTQ C + G+V Y+DT
Sbjct 79 DSLLQGGFREGQLTELVGPSSSGKTQFCMQAAASVA-----ENHLGRVLYLDT 126
> cpv:cgd2_3880 hypothetical protein
Length=497
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 0/43 (0%)
Query 13 IAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDTEA 55
I I G GK+ + L + LP E+GG KV YIDT++
Sbjct 97 ILGIMGSIGSGKSLLIMHLIAISILPEEIGGHDQKVYYIDTDS 139
> hsa:5892 RAD51L3, R51H3, RAD51D, TRAD; RAD51-like 3 (S. cerevisiae);
K10871 RAD51-like protein 3
Length=348
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDT 53
D+LL G+ + + EI G GKTQ+C LC+ A + G V Y+D+
Sbjct 110 DKLLDAGLYTGEVTEIVGGPGSGKTQVC--LCMAANVAH---GLQQNVLYVDS 157
> xla:444788 rad51l3, MGC82048; RAD51-like 3; K10871 RAD51-like
protein 3
Length=324
Score = 29.3 bits (64), Expect = 3.4, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVCYIDT 53
D LL G+ + + EI G GKTQ+C ++ V + V Y+DT
Sbjct 90 DILLDSGLYTGEVTEIAGAAGSGKTQMCQSIAVNVAYSLKQ-----TVLYVDT 137
> cpv:cgd4_2050 hypothetical protein
Length=133
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query 23 GKTQICHTLCVTAQLPREMGGGCGKVCYI-DTE 54
GKT +C L + Q+P+ +GG YI D+E
Sbjct 21 GKTLLCKILALNIQIPKSIGGPGLNAIYIGDSE 53
> eco:b2699 recA, ECK2694, JW2669, lexB, recH, rnmB, srf, tif,
umuB, umuR, zab; DNA strand exchange and recombination protein
with protease and nuclease activity; K03553 recombination
protein RecA
Length=353
Score = 27.7 bits (60), Expect = 8.4, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query 3 LLGGGIESMSIAEIFGENRCGKTQICHTLCVTAQLPREMGGGCGKVC-YIDTE 54
L GG+ I EI+G GKT + TL V A RE GK C +ID E
Sbjct 52 LGAGGLPMGRIVEIYGPESSGKTTL--TLQVIAAAQRE-----GKTCAFIDAE 97
> tpv:TP04_0453 hypothetical protein
Length=286
Score = 27.7 bits (60), Expect = 8.6, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 0/31 (0%)
Query 1 DQLLGGGIESMSIAEIFGENRCGKTQICHTL 31
DQ L GG+ + EI+G + GKTQ +L
Sbjct 36 DQALNGGLLLGKVCEIYGPSGSGKTQFALSL 66
Lambda K H
0.321 0.140 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2005549208
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
Posted date: Sep 17, 2011 11:19 AM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40