bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
164,496 sequences; 82,071,388 total letters
Query= Emax_2413_orf2
Length=127
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_005220 U5 snRNP-associated 102 kDa protein, putativ... 207 5e-54
pfa:PF11_0108 U5 snRNP-associated protein, putative; K12855 pr... 141 6e-34
tpv:TP01_0797 hypothetical protein; K12855 pre-mRNA-processing... 137 9e-33
bbo:BBOV_IV009720 23.m06014; u5 snRNP-associated subunit, puta... 131 5e-31
ath:AT4G03430 EMB2770 (EMBRYO DEFECTIVE 2770); RNA splicing fa... 130 7e-31
dre:323855 c20orf14, fc12b02, prpf6, wu:fa05f07, wu:fc12b02, z... 129 2e-30
xla:447198 prpf6, MGC80263; PRP6 pre-mRNA processing factor 6 ... 126 1e-29
mmu:68879 Prpf6, 1190003A07Rik, 2610031L17Rik, ANT-1, MGC11655... 125 3e-29
hsa:24148 PRPF6, ANT-1, C20orf14, Prp6, TOM, U5-102K, hPrp6; P... 125 3e-29
hsa:653889 pre-mRNA-processing factor 6-like 91.3 7e-19
cel:Y59A8B.6 hypothetical protein; K12855 pre-mRNA-processing ... 73.9 1e-13
cpv:cgd5_920 Pre-mRNA splicing factor Pro1/Prp6. HAT repeat pr... 73.2 2e-13
xla:779090 pdcd11, alg-4, alg4, nfbp, rrp5; programmed cell de... 38.9 0.004
dre:794079 pdcd11, MGC162501, cb680, im:7148359, sb:cb680, wu:... 38.5 0.005
ath:AT5G41770 crooked neck protein, putative / cell cycle prot... 37.7 0.009
mmu:18572 Pdcd11, 1110021I22Rik, ALG-4, Pdcd7, mKIAA0185; prog... 37.4 0.011
cpv:cgd8_900 Ydr449cp/Utp6p; small (ribosomal) subunit (SSU) p... 36.2 0.025
hsa:22984 PDCD11, ALG-4, ALG4, KIAA0185, NFBP, RRP5; programme... 35.8 0.037
ath:AT3G11964 RNA binding; K14792 rRNA biogenesis protein RRP5 35.4 0.051
cel:C16A3.3 let-716; LEThal family member (let-716); K14792 rR... 35.0 0.061
sce:YMR229C RRP5; RNA binding protein with preference for sing... 34.7 0.075
ath:AT5G45990 crooked neck protein, putative / cell cycle prot... 34.7 0.081
hsa:51340 CRNKL1, CLF, CRN, Clf1, HCRN, MSTP021, SYF3; crooked... 34.3 0.11
cel:M03F8.3 hypothetical protein; K12869 crooked neck 33.9 0.12
dre:100334796 Pre-mRNA-processing factor 39-like 33.1 0.20
mmu:66877 Crnkl1, 1200013P10Rik, 5730590A01Rik, C80326, crn; C... 33.1 0.22
tgo:TGME49_053520 hypothetical protein 32.7 0.33
dre:393920 crnkl1, MGC55327, zgc:55327; crooked neck pre-mRNA ... 32.3 0.34
ath:AT3G13210 crooked neck protein, putative / cell cycle prot... 32.0 0.51
cel:F25B4.5 hypothetical protein; K13217 pre-mRNA-processing f... 31.6 0.65
dre:393107 utp6, MGC174851, MGC55648, zgc:55648; UTP6, small s... 31.2 0.79
cel:Y39A3CR.3 hypothetical protein 30.8 1.0
bbo:BBOV_III004750 17.m07426; tetratricopeptide repeat domain ... 30.8 1.1
mmu:216345 Zfc3h1, BC033596, Ccdc131, Psrc2; zinc finger, C3H1... 30.8 1.2
pfa:PFD0180c CGI-201 protein, short form; K12869 crooked neck 30.0 1.8
cel:C50F2.3 hypothetical protein; K12867 pre-mRNA-splicing fac... 30.0 2.0
bbo:BBOV_IV005070 23.m05737; hypothetical protein; K14792 rRNA... 29.6 2.7
dre:368864 prpf39, fa10d07, si:dz261o22.3, wu:fa10d07; PRP39 p... 29.3 3.1
hsa:9733 SART3, DSAP1, KIAA0156, MGC138188, P100, RP11-13G14, ... 29.3 3.2
mmu:53890 Sart3, AU045857, mKIAA0156; squamous cell carcinoma ... 29.3 3.4
tpv:TP02_0476 crooked neck protein; K12869 crooked neck 29.3 3.5
dre:550347 ttc5, wu:fi33h05, wu:fy81e07, zgc:112059; tetratric... 29.3 3.6
hsa:196441 ZFC3H1, CCDC131, DKFZp686A0722, KIAA0546, MGC23401,... 28.9 4.2
mmu:217827 6720454P05Rik; cDNA sequence BC002230 28.5 4.9
sce:YMR089C YTA12, RCA1; Component, with Afg3p, of the mitocho... 28.5 5.3
ath:AT3G17040 HCF107; HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107... 28.5 6.0
mmu:67439 Xab2, 0610041O14Rik, AV025587; XPA binding protein 2... 28.1 6.3
hsa:56949 XAB2, DKFZp762C1015, HCNP, HCRN, NTC90, SYF1; XPA bi... 28.1 6.7
ath:AT3G51110 crooked neck protein, putative / cell cycle prot... 28.1 7.3
mmu:217664 Mgat2, AA407964, CDGS2, GLCNACTII, GNT-II, GNT2, MG... 28.1 7.3
> tgo:TGME49_005220 U5 snRNP-associated 102 kDa protein, putative
; K12855 pre-mRNA-processing factor 6
Length=985
Score = 207 bits (528), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 99/127 (77%), Positives = 113/127 (88%), Gaps = 0/127 (0%)
Query 1 IGRGVAQTRDVWLKLAEEAESSGFLTTAQAIIKATMKVGVEGINAKRVWSEDAEECLSRG 60
I RGVAQTRDVWL+LAEEAE+SGF+ T QAI++ATMKVGVEG+NAKR+W EDAEE LSRG
Sbjct 561 IARGVAQTRDVWLRLAEEAEASGFMATCQAIVRATMKVGVEGMNAKRIWKEDAEEALSRG 620
Query 61 SITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMA 120
S+ ARALYT A+ERLKTKKSLWLALADLETKHGT + LEK+L KAV CCP+A+VLWLM
Sbjct 621 SVATARALYTCAIERLKTKKSLWLALADLETKHGTTQDLEKLLAKAVVCCPQAEVLWLML 680
Query 121 AKQQWLK 127
AKQ WL+
Sbjct 681 AKQHWLQ 687
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 0/59 (0%)
Query 59 RGSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLW 117
+G +VARA+ A R LW A +E + G ++ + V KAV CP + ++W
Sbjct 825 QGKWSVARAILEKAKLRNPKNPDLWHAAIRIEVEAGNKQMAQHVASKAVQECPNSGLVW 883
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query 44 NAKRVWSEDAEECLSRGSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVL 103
N+ R+W +E +S AR + T A+E + +WLALA L + E +KVL
Sbjct 468 NSVRLW----KEAVSLEEEKNARIMLTRAVECVPQSVEIWLALARL----SSYEEAQKVL 519
Query 104 QKAVTCCPKADVLWLMAAK 122
+A CP + +W+ A K
Sbjct 520 NEARKKCPTSPEIWVAACK 538
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query 43 INAKRVWSEDAEECLSRGSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEK- 101
+N ++VW + + G A AL AL+ LW+ L +H T++ EK
Sbjct 738 VNTQKVWIQSVQLERQVGDYDAAIALCEEALKSHAECPKLWMIGGQLHREHPTKKDEEKA 797
Query 102 --VLQKAVTCCPKADVLWLMAAKQQ 124
V Q+ C ++ LWL A Q
Sbjct 798 AEVFQRGTVVCCRSVPLWLCAVDCQ 822
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 0/40 (0%)
Query 83 WLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAK 122
W+A A LE G +A +++ CPK++ +WL AA+
Sbjct 378 WIAAARLEELAGKLQAARELIATGCQQCPKSEDVWLEAAR 417
> pfa:PF11_0108 U5 snRNP-associated protein, putative; K12855
pre-mRNA-processing factor 6
Length=1329
Score = 141 bits (355), Expect = 6e-34, Method: Composition-based stats.
Identities = 65/118 (55%), Positives = 84/118 (71%), Gaps = 0/118 (0%)
Query 9 RDVWLKLAEEAESSGFLTTAQAIIKATMKVGVEGINAKRVWSEDAEECLSRGSITVARAL 68
RD W+K AEE E S F T ++II+ TM +GVE +N KR++ +DA+ C+ SI AR L
Sbjct 619 RDKWIKFAEECEQSKFTHTCESIIRNTMHIGVETLNKKRIYKQDAQNCIHNKSIHTARTL 678
Query 69 YTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAKQQWL 126
Y AL+ KTKKSLWLALA+LE HG RE +++VL +AV CP + VLWLM AKQ+WL
Sbjct 679 YNEALKIFKTKKSLWLALANLELTHGKREDVDEVLHRAVQSCPHSSVLWLMLAKQKWL 736
Score = 31.2 bits (69), Expect = 0.83, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 13/108 (12%)
Query 12 WLKLAEEAESSGFLTTAQAIIKATMKVGVEGINAKRVWSEDA--EECLSRGSITVARALY 69
W+ A E + A+ II MK V + +W E EE LS I +A+A+
Sbjct 427 WIAAARIEELAQRKDKAKEII---MKGCVVCSKNEDIWLEAVRLEEKLSEVKIILAKAI- 482
Query 70 THALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLW 117
+ + T LWL + K + KVL+KA+ C P + LW
Sbjct 483 ----KHIPTSVKLWL---EAYKKEKNVDDKRKVLRKAIECIPNSVKLW 523
Score = 27.7 bits (60), Expect = 8.5, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query 36 MKVGVEGI-NAKRVWSEDAEECLSRGSITVARALYTHALERLKTKKSLWLALADLETKHG 94
+K VE I + +W A C + T A+ + A +++ T +W+ + LE K G
Sbjct 539 LKRAVECIPQSIEMWIALARLC----TYTEAQKVLNEARKKIPTSAEIWINASQLEEKQG 594
Query 95 TREALEKVLQKAVTCCPKADVLWLMAAKQQWLK 127
+ ++ ++++ + +V++ + +W+K
Sbjct 595 NIKMVDIIIKRCIENLSSKNVIF---DRDKWIK 624
> tpv:TP01_0797 hypothetical protein; K12855 pre-mRNA-processing
factor 6
Length=1032
Score = 137 bits (345), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 88/125 (70%), Gaps = 0/125 (0%)
Query 3 RGVAQTRDVWLKLAEEAESSGFLTTAQAIIKATMKVGVEGINAKRVWSEDAEECLSRGSI 62
+GV R WLK AE AE++ F+ TAQ+IIK TM +GV+ N K VW ED E + GS
Sbjct 502 KGVVHIRSNWLKQAETAEANSFVKTAQSIIKNTMTIGVDEHNRKSVWLEDGETFVEHGSY 561
Query 63 TVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAK 122
ARALY +ALE +KT+ SLWLAL +LE+KHGT + +E L+ AV+ CP +++LWLM AK
Sbjct 562 ECARALYKNALEYMKTRSSLWLALVELESKHGTPDKVEDHLRSAVSYCPNSEILWLMYAK 621
Query 123 QQWLK 127
+W++
Sbjct 622 HKWVE 626
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query 60 GSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLM 119
G I AR + E K+ +WL A LE E + +L KA+ P + LWL
Sbjct 328 GKIEAAREIIAQGCENCPDKEDVWLEAARLEKP----EYAKSILAKAIKIIPTSVKLWLE 383
Query 120 AAKQQ 124
AA ++
Sbjct 384 AADKE 388
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query 44 NAKRVWSEDAEECLSRGSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVL 103
N+ R+W +E +S + T A L A+E + +WLALA L E +KVL
Sbjct 407 NSIRLW----KEAISLENETNAYILLKRAVECVPESLDMWLALARL----CPYEEAQKVL 458
Query 104 QKAVTCCPKADVLWLMAAK 122
+A P +W+ AAK
Sbjct 459 NEARKKLPTNVDIWITAAK 477
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 0/40 (0%)
Query 83 WLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAK 122
W+A A +E G EA +++ + CP + +WL AA+
Sbjct 317 WIAAARMEELAGKIEAAREIIAQGCENCPDKEDVWLEAAR 356
> bbo:BBOV_IV009720 23.m06014; u5 snRNP-associated subunit, putaitve;
K12855 pre-mRNA-processing factor 6
Length=1040
Score = 131 bits (330), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 84/125 (67%), Gaps = 0/125 (0%)
Query 3 RGVAQTRDVWLKLAEEAESSGFLTTAQAIIKATMKVGVEGINAKRVWSEDAEECLSRGSI 62
+GV R WLK AE+ E + F+ TAQAIIK TM +G++ K W ED E +
Sbjct 506 KGVIHVRSNWLKQAEQCEENNFVQTAQAIIKCTMNIGLDPALLKETWLEDGERMEEKKLF 565
Query 63 TVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAK 122
ARA+Y ALE++KTKKSLWLALA+LET+HG E ++ VL +A CP +D+LWLMAAK
Sbjct 566 ACARAIYRSALEQMKTKKSLWLALAELETRHGKPEDVDDVLSQATKYCPNSDILWLMAAK 625
Query 123 QQWLK 127
+W++
Sbjct 626 HKWIQ 630
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query 60 GSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLM 119
G I+ AR + A E+ ++ +WL A LE E + VL KAV P++ +W+
Sbjct 332 GKISSAREIIAQACEKCGDREDVWLEAARLEKP----EYAKAVLAKAVRMVPQSVKIWVE 387
Query 120 AAKQQ 124
AA+++
Sbjct 388 AARRE 392
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query 61 SITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMA 120
S A+ + A + L T +W+ A LE +G ++ +EK++ + + K V+ +
Sbjct 454 SYQEAQKVLNEARKHLPTNADIWITAAKLEESNGNQQMVEKIISRGLDNLSKKGVIHV-- 511
Query 121 AKQQWLK 127
+ WLK
Sbjct 512 -RSNWLK 517
> ath:AT4G03430 EMB2770 (EMBRYO DEFECTIVE 2770); RNA splicing
factor, transesterification mechanism; K12855 pre-mRNA-processing
factor 6
Length=1029
Score = 130 bits (328), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 66/123 (53%), Positives = 84/123 (68%), Gaps = 0/123 (0%)
Query 4 GVAQTRDVWLKLAEEAESSGFLTTAQAIIKATMKVGVEGINAKRVWSEDAEECLSRGSIT 63
GV R+ W+ AE E G + T QAIIK T+ +GVE + KR W DA+EC RGSI
Sbjct 583 GVVIDRENWMSEAEACERVGSVATCQAIIKNTIGIGVEEEDRKRTWVADADECKKRGSIE 642
Query 64 VARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAKQ 123
ARA+Y HAL TKKS+WL A LE HG+RE+L+ +L+KAVT P+A+VLWLM AK+
Sbjct 643 TARAIYAHALSVFLTKKSIWLKAAQLEKSHGSRESLDALLRKAVTYVPQAEVLWLMGAKE 702
Query 124 QWL 126
+WL
Sbjct 703 KWL 705
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 0/58 (0%)
Query 60 GSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLW 117
+ ARA+ T A ++ LWLA E +H + E ++ KA+ CPK+ +LW
Sbjct 842 NGLNKARAILTTARKKNPGGAELWLAAIRAELRHDNKREAEHLMSKALQDCPKSGILW 899
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 0/76 (0%)
Query 46 KRVWSEDAEECLSRGSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQK 105
+RVW + A G++ R L L++ T LWL L LE + E K
Sbjct 760 ERVWMKSAIVERELGNVEEERRLLNEGLKQFPTFFKLWLMLGQLEERFKHLEQARKAYDT 819
Query 106 AVTCCPKADVLWLMAA 121
+ CP LWL A
Sbjct 820 GLKHCPHCIPLWLSLA 835
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 24/137 (17%)
Query 6 AQTRDVWL---KLAEEAESSGFLTTAQAIIKATMKVGVEGI-------NAKRVWSEDAEE 55
+ DVWL +LA ++ G + +I ++K+ +E N RV + E
Sbjct 418 PKNEDVWLEACRLANPEDAKGVIAKGVKLIPNSVKLWLEAAKLEHDVENKSRVLRKGLEH 477
Query 56 ----------CLSRGSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQK 105
+ + AR L A+E LW+ALA LET ++ KVL K
Sbjct 478 IPDSVRLWKAVVELANEEDARILLHRAVECCPLHLELWVALARLETYAESK----KVLNK 533
Query 106 AVTCCPKADVLWLMAAK 122
A PK +W+ AAK
Sbjct 534 AREKLPKEPAIWITAAK 550
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query 9 RDVWLKLAEEAESSGFLTTAQAIIKATMKVGVEGINAKRVWSEDAEECLSRGSITVARAL 68
+ +WLK A+ +S G + A+++ + + A+ +W A+E G + ARA+
Sbjct 659 KSIWLKAAQLEKSHGSRESLDALLRKAVTYVPQ---AEVLWLMGAKEKWLAGDVPAARAI 715
Query 69 YTHALERLKTKKSLWLALADLETKHGTREALEKVLQKA 106
A + + +WLA LE ++ E +L KA
Sbjct 716 LQEAYAAIPNSEEIWLAAFKLEFENKEPERARMLLAKA 753
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 0/58 (0%)
Query 65 ARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAK 122
AR LY + + W+A A +E G +A +Q+ CPK + +WL A +
Sbjct 372 ARLLYKSLTQSNPKNPNGWIAAARVEEVDGKIKAARFQIQRGCEECPKNEDVWLEACR 429
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 0/58 (0%)
Query 65 ARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAK 122
ARA + A+ W E +HG+ E ++V+ K V C PK W +K
Sbjct 945 ARAWFERAVTVGPDIGDFWALFYKFELQHGSDEDRKEVVAKCVACEPKHGEKWQAISK 1002
> dre:323855 c20orf14, fc12b02, prpf6, wu:fa05f07, wu:fc12b02,
zgc:65913; c20orf14 homolog (H. sapiens); K12855 pre-mRNA-processing
factor 6
Length=944
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 86/123 (69%), Gaps = 0/123 (0%)
Query 4 GVAQTRDVWLKLAEEAESSGFLTTAQAIIKATMKVGVEGINAKRVWSEDAEECLSRGSIT 63
GV R+ W++ AEE + +G + T Q++I+A + +G+E + K W EDA+ C+S G++
Sbjct 501 GVEINREQWIQDAEECDKAGSVVTCQSVIRAVIGIGIEEEDCKHTWMEDADSCVSHGALE 560
Query 64 VARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAKQ 123
ARA+Y HAL+ +KKS+WL A E +GTRE+LE +LQ+AV CPKA+VLWLM AK
Sbjct 561 CARAIYAHALQVFPSKKSVWLRAAYFEKNNGTRESLEALLQRAVAHCPKAEVLWLMGAKS 620
Query 124 QWL 126
+WL
Sbjct 621 KWL 623
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 0/65 (0%)
Query 61 SITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMA 120
SI AR Y L++ SLWL L+ LE K G +L+KA P++ LWL +
Sbjct 727 SIDRAREAYNQGLKKCPHSMSLWLLLSRLEEKVGQLTRARAILEKARLKNPQSPELWLES 786
Query 121 AKQQW 125
+ ++
Sbjct 787 VRLEY 791
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query 65 ARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAK 122
AR + + A+E T LWLALA LET R +VL KA P +W+ AAK
Sbjct 422 ARIMLSRAVECCPTSVELWLALARLETYENAR----RVLNKARENIPTDRHIWITAAK 475
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query 60 GSITVARALYTHALERLKTKKS--LWLALADLETKHGTREALEKVLQKAVTCCPKADVLW 117
G +T ARA+ A RLK +S LWL LE + G + ++ KA+ CP + +LW
Sbjct 760 GQLTRARAILEKA--RLKNPQSPELWLESVRLEYRAGLKNIANTLMAKALQECPNSGILW 817
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 0/44 (0%)
Query 65 ARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVT 108
AR + A E + T + +W+ A LE +G + +EK++ +A+T
Sbjct 452 ARRVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAIT 495
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 0/64 (0%)
Query 61 SITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMA 120
I AR L E W+A A LE G + ++ K CPK++ +WL A
Sbjct 293 DIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEA 352
Query 121 AKQQ 124
A+ Q
Sbjct 353 ARLQ 356
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 14/117 (11%)
Query 6 AQTRDVWLKLAEEAESSGFLTTAQAIIKATMKVGVEGINAKRVWSEDAEECLSRGSITVA 65
++ DVWL+ A TA+A++ ++ + + R++ AE I
Sbjct 343 PKSEDVWLEAARLQPGD----TAKAVVAQAVRHLPQSV---RIYIRAAE---LETDIRAK 392
Query 66 RALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAK 122
+ + ALE + LW +LE R +L +AV CCP + LWL A+
Sbjct 393 KRVLRKALENVSKSVRLWKTAVELEEPEDAR----IMLSRAVECCPTSVELWLALAR 445
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 0/63 (0%)
Query 60 GSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLM 119
G+I A L T AL+ + LW+ +E + + + + + + CP + LWL+
Sbjct 692 GNIEAAHELCTEALKHYEDFPKLWMMRGQIEEQSESIDRAREAYNQGLKKCPHSMSLWLL 751
Query 120 AAK 122
++
Sbjct 752 LSR 754
> xla:447198 prpf6, MGC80263; PRP6 pre-mRNA processing factor
6 homolog; K12855 pre-mRNA-processing factor 6
Length=948
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 84/123 (68%), Gaps = 0/123 (0%)
Query 4 GVAQTRDVWLKLAEEAESSGFLTTAQAIIKATMKVGVEGINAKRVWSEDAEECLSRGSIT 63
GV R+ W++ AEE + +G + T QAII+ + +G+E + K W EDA+ C++ ++
Sbjct 505 GVEINREQWIQDAEECDKAGSVVTCQAIIRDVIGIGIEEEDRKHTWMEDADSCVAHSALE 564
Query 64 VARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAKQ 123
ARA+Y H+L+ +KKS+WL A E HGTRE+LE +LQ+AV CPKA+VLWLM AK
Sbjct 565 CARAIYAHSLQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKS 624
Query 124 QWL 126
+WL
Sbjct 625 KWL 627
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query 65 ARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAK 122
AR + + A+E T LWLALA LET R KVL KA P +W+ AAK
Sbjct 426 ARIMLSRAVECCPTNVELWLALARLETYENAR----KVLNKARENIPTDRHIWITAAK 479
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query 60 GSITVARALYTHALERLKTKKS--LWLALADLETKHGTREALEKVLQKAVTCCPKADVLW 117
G +T ARA+ + RLK K+ LWL LE + G + ++ KA+ CP + +LW
Sbjct 764 GQLTRARAILEKS--RLKNPKTPELWLESVRLEFRAGLKNIANTLMAKALQECPNSGILW 821
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 0/44 (0%)
Query 65 ARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVT 108
AR + A E + T + +W+ A LE +G + +EK++ +A+T
Sbjct 456 ARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAIT 499
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 0/61 (0%)
Query 65 ARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAKQQ 124
AR Y L++ SLWL L+ LE K G +L+K+ PK LWL + + +
Sbjct 735 ARDAYNQGLKKCIHSTSLWLLLSRLEEKVGQLTRARAILEKSRLKNPKTPELWLESVRLE 794
Query 125 W 125
+
Sbjct 795 F 795
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 0/65 (0%)
Query 60 GSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLM 119
I AR L E W+A A LE G + ++ K CPK++ +WL
Sbjct 296 NDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLE 355
Query 120 AAKQQ 124
AA+ Q
Sbjct 356 AARLQ 360
> mmu:68879 Prpf6, 1190003A07Rik, 2610031L17Rik, ANT-1, MGC11655,
MGC36967, MGC38351, U5-102K; PRP6 pre-mRNA splicing factor
6 homolog (yeast); K12855 pre-mRNA-processing factor 6
Length=941
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 85/123 (69%), Gaps = 0/123 (0%)
Query 4 GVAQTRDVWLKLAEEAESSGFLTTAQAIIKATMKVGVEGINAKRVWSEDAEECLSRGSIT 63
GV R+ W++ AEE + +G + T QA+++A + +G+E + K W EDA+ C++ ++
Sbjct 498 GVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNALE 557
Query 64 VARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAKQ 123
ARA+Y +AL+ +KKS+WL A E HGTRE+LE +LQ+AV CPKA+VLWLM AK
Sbjct 558 CARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKS 617
Query 124 QWL 126
+WL
Sbjct 618 KWL 620
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query 65 ARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAK 122
AR + + A+E T LWLALA LET R KVL KA P +W+ AAK
Sbjct 419 ARIMLSRAVECCPTSVELWLALARLETYENAR----KVLNKARENIPTDRHIWITAAK 472
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query 60 GSITVARALYTHALERLKTKKS--LWLALADLETKHGTREALEKVLQKAVTCCPKADVLW 117
G +T ARA+ + RLK K+ LWL LE + G + ++ KA+ CP + +LW
Sbjct 757 GQLTRARAILEKS--RLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILW 814
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 0/44 (0%)
Query 65 ARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVT 108
AR + A E + T + +W+ A LE +G + +EK++ +A+T
Sbjct 449 ARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAIT 492
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 0/61 (0%)
Query 65 ARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAKQQ 124
AR Y L++ LWL L+ LE K G +L+K+ PK LWL + + +
Sbjct 728 AREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLE 787
Query 125 W 125
+
Sbjct 788 Y 788
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 0/65 (0%)
Query 60 GSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLM 119
I AR L E W+A A LE G + ++ K CPK++ +WL
Sbjct 289 NDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLE 348
Query 120 AAKQQ 124
AA+ Q
Sbjct 349 AARLQ 353
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 0/63 (0%)
Query 60 GSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLM 119
G+I+ A+ L AL + LW+ +E + E + + + CP + LWL+
Sbjct 689 GNISAAQELCEEALRHYEDFPKLWMMKGQIEEQGELMEKAREAYNQGLKKCPHSTPLWLL 748
Query 120 AAK 122
++
Sbjct 749 LSR 751
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 7/116 (6%)
Query 14 KLAEEAESSGFLTTAQAIIKATMKVGVEGINAKRVWSEDAEECL-------SRGSITVAR 66
K +E +SG L + ++A + + ++A + D L S IT AR
Sbjct 802 KALQECPNSGILWSEAVFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAR 861
Query 67 ALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAK 122
+ ++ W E +HGT E E+V ++ P+ LW +K
Sbjct 862 EWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRCENAEPRHGELWCAVSK 917
> hsa:24148 PRPF6, ANT-1, C20orf14, Prp6, TOM, U5-102K, hPrp6;
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae);
K12855 pre-mRNA-processing factor 6
Length=941
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 85/123 (69%), Gaps = 0/123 (0%)
Query 4 GVAQTRDVWLKLAEEAESSGFLTTAQAIIKATMKVGVEGINAKRVWSEDAEECLSRGSIT 63
GV R+ W++ AEE + +G + T QA+++A + +G+E + K W EDA+ C++ ++
Sbjct 498 GVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNALE 557
Query 64 VARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAKQ 123
ARA+Y +AL+ +KKS+WL A E HGTRE+LE +LQ+AV CPKA+VLWLM AK
Sbjct 558 CARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKS 617
Query 124 QWL 126
+WL
Sbjct 618 KWL 620
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query 65 ARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAK 122
AR + + A+E T LWLALA LET R KVL KA P +W+ AAK
Sbjct 419 ARIMLSRAVECCPTSVELWLALARLETYENAR----KVLNKARENIPTDRHIWITAAK 472
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query 60 GSITVARALYTHALERLKTKKS--LWLALADLETKHGTREALEKVLQKAVTCCPKADVLW 117
G +T ARA+ + RLK K+ LWL LE + G + ++ KA+ CP + +LW
Sbjct 757 GQLTRARAILEKS--RLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILW 814
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 0/44 (0%)
Query 65 ARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVT 108
AR + A E + T + +W+ A LE +G + +EK++ +A+T
Sbjct 449 ARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAIT 492
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 0/61 (0%)
Query 65 ARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAKQQ 124
AR Y L++ LWL L+ LE K G +L+K+ PK LWL + + +
Sbjct 728 AREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLE 787
Query 125 W 125
+
Sbjct 788 Y 788
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 0/65 (0%)
Query 60 GSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLM 119
I AR L E W+A A LE G + ++ K CPK++ +WL
Sbjct 289 NDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLE 348
Query 120 AAKQQ 124
AA+ Q
Sbjct 349 AARLQ 353
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 7/116 (6%)
Query 14 KLAEEAESSGFLTTAQAIIKATMKVGVEGINAKRVWSEDAEECL-------SRGSITVAR 66
K +E +SG L + ++A + + ++A + D L S+ IT AR
Sbjct 802 KALQECPNSGILWSEAIFLEARPQRRTKSVDALKKCEHDPHVLLAVAKLFWSQRKITKAR 861
Query 67 ALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAK 122
+ ++ W E +HGT E E+V ++ + P+ LW +K
Sbjct 862 EWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRCESAEPRHGELWCAVSK 917
> hsa:653889 pre-mRNA-processing factor 6-like
Length=406
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 56/76 (73%), Gaps = 0/76 (0%)
Query 51 EDAEECLSRGSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCC 110
EDA+ C++ ++ ARA+Y +AL+ +KKS+WL A E HGTRE+LE +LQ+AV C
Sbjct 10 EDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHC 69
Query 111 PKADVLWLMAAKQQWL 126
PKA+VLWLM AK +WL
Sbjct 70 PKAEVLWLMGAKSKWL 85
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query 60 GSITVARALYTHALERLKTKKS--LWLALADLETKHGTREALEKVLQKAVTCCPKADVLW 117
G +T ARA+ + RLK K+ LWL LE + G + ++ KA+ CP + +LW
Sbjct 222 GQLTRARAILEKS--RLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILW 279
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 0/61 (0%)
Query 65 ARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAKQQ 124
AR Y L++ LWL L+ LE K G +L+K+ PK LWL + + +
Sbjct 193 AREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLE 252
Query 125 W 125
+
Sbjct 253 Y 253
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 7/116 (6%)
Query 14 KLAEEAESSGFLTTAQAIIKATMKVGVEGINAKRVWSEDAEECL-------SRGSITVAR 66
K +E +SG L + ++A + + ++A + D L S+ IT AR
Sbjct 267 KALQECPNSGILWSEAIFLEARPQRRTKSVDALKKCEHDPHVLLAVAKLFWSQRKITKAR 326
Query 67 ALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAK 122
+ ++ W E +HGT E E+V ++ + P+ LW +K
Sbjct 327 EWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRCESAEPRHGELWCAVSK 382
> cel:Y59A8B.6 hypothetical protein; K12855 pre-mRNA-processing
factor 6
Length=968
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 0/120 (0%)
Query 8 TRDVWLKLAEEAESSGFLTTAQAIIKATMKVGVEGINAKRVWSEDAEECLSRGSITVARA 67
RD WLK A +AE + T QAII+ + +GVE + + W DAE + T R
Sbjct 528 NRDQWLKDAVDAEMAKCPITCQAIIRNVIGLGVEDEDKRTTWLADAENFEKEEAFTCVRT 587
Query 68 LYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAKQQWLK 127
+Y AL+ K+S+W A E +HG+ + E +L KA P+ + WLM AK +++
Sbjct 588 VYAIALKEFSRKRSIWDAAIHFEREHGSLDEHEAILLKACETVPEVEDYWLMLAKLRFVN 647
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query 65 ARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAK 122
AR L T A+E + +WLALA LET R KVL KA P +WL AA+
Sbjct 445 ARILLTRAVECCSSSTEMWLALARLETYENAR----KVLNKAREHIPTDRHIWLSAAR 498
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 0/58 (0%)
Query 65 ARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAK 122
AR YT + + LW+ L LE K G L+KA PK D LWL + +
Sbjct 755 ARLAYTQGIRKCPGVIPLWILLVRLEEKAGQIVKARVDLEKARLRNPKNDDLWLESVR 812
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query 72 ALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAK 122
ALE++ + LW A +LE R +L +AV CC + +WL A+
Sbjct 422 ALEQIPSSVKLWKAAVELEDPEDAR----ILLTRAVECCSSSTEMWLALAR 468
> cpv:cgd5_920 Pre-mRNA splicing factor Pro1/Prp6. HAT repeat
protein ; K12855 pre-mRNA-processing factor 6
Length=923
Score = 73.2 bits (178), Expect = 2e-13, Method: Composition-based stats.
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query 7 QTRDVWLKLAEEAESSGFLTTAQAIIKATMKVGVE--GINAKRVWSEDAEECLSRGSITV 64
+RD WL A E E G+ T +IIK T +G++ IN +V+S + + +I
Sbjct 464 HSRDDWLNRAGECEKEGYSNTCISIIKNTWNLGIDDDAIN-DQVFSY-IDNFIKSNNIIS 521
Query 65 ARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAKQQ 124
ARA++ + + K+K+ W+ A+ E K+G E ++ VLQK++ CP +LWL AA+ Q
Sbjct 522 ARAMFESSADMFKSKEYFWIKWANFEEKYGNFEKVDHVLQKSLKNCPDKQILWLKAAQNQ 581
Score = 37.4 bits (85), Expect = 0.011, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query 32 IKATMKVGVEGIN----AKRVWSEDAEECLSRGSITVARALYTHALERLKTKKSLWLALA 87
I +K+ EG+N + +W E + + AR A + K + LW+
Sbjct 691 INEALKIYEEGLNFCSDSIELWFSTIELLMLLQNWKKARTFLDLARSKNKNQPELWMQTI 750
Query 88 DLETKHGTREALEKVLQKAVTCCPKADVLW 117
LE G E + ++L KA+ CPK+ +L+
Sbjct 751 KLEKNAGNNEFIPQILSKALKECPKSGLLY 780
Score = 28.9 bits (63), Expect = 4.3, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query 72 ALERLKTKKSLW---LALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAK 122
ALE + LW ++L D E++ + +L KAV C P+++ LWL A+
Sbjct 359 ALEFIPNSIKLWKEAISLVDNESE-------KALLSKAVKCVPQSEELWLRYAR 405
> xla:779090 pdcd11, alg-4, alg4, nfbp, rrp5; programmed cell
death 11; K14792 rRNA biogenesis protein RRP5
Length=1812
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query 10 DVWLKLAEEAESSGFLTTAQAIIKATMKVGVEGINAKRVWSEDAEECLSRGSITVARALY 69
+VW+ L G T +++ KA + V+ +V+ + A+ + A LY
Sbjct 1600 NVWVALLNLENMYG---TEESLTKA-FERAVQYNEPLKVFQQLADIYIKSEKFKQAEDLY 1655
Query 70 THALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKAD 114
L+R + +KS+W+ A K G + K+LQ+A+ P+ D
Sbjct 1656 NTMLKRFRQEKSVWIKFATFLLKQGQGDGTHKLLQRALKSLPEKD 1700
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 0/51 (0%)
Query 57 LSRGSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAV 107
+ + + RAL T + + K ++W+AL +LE +GT E+L K ++AV
Sbjct 1576 IEKARVVAERALKTISFREEQEKLNVWVALLNLENMYGTEESLTKAFERAV 1626
Score = 33.1 bits (74), Expect = 0.21, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Query 7 QTRDVWLKLAEEAESSGFLTTAQAIIKATMKVGVEGINAKRVWSEDAEECLSRGSITVAR 66
Q + VW+K A G +++ +K E + V S+ A+ G A+
Sbjct 1664 QEKSVWIKFATFLLKQGQGDGTHKLLQRALKSLPEKDHVD-VISKFAQLEFQLGDTERAK 1722
Query 67 ALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAV 107
AL+ L + LW D+ KHG+++ + + ++ +
Sbjct 1723 ALFESTLSSYPKRTDLWSVYIDMMVKHGSQKEVRDIFERVI 1763
> dre:794079 pdcd11, MGC162501, cb680, im:7148359, sb:cb680, wu:fc68c10;
programmed cell death 11; K14792 rRNA biogenesis
protein RRP5
Length=1816
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 0/45 (0%)
Query 66 RALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCC 110
RAL T + + K ++W+A+ +LE +GT ++L+KV ++A+ C
Sbjct 1589 RALKTISFREEQEKLNIWVAMLNLENMYGTPDSLQKVFERAIQYC 1633
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query 65 ARALYTHALERLKTKKSLWLA--LADLETKHGTREALEKVLQKAVTCCPKADVLW 117
A AL AL+ L +K+ + L A LE + G E + + K +T PK LW
Sbjct 1689 ANALLQRALQSLSSKEHVDLIARFARLEFQFGNSEKAKSMFDKVLTTYPKRTDLW 1743
Score = 28.1 bits (61), Expect = 7.4, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query 60 GSITVARALYTHALERLKTKKSLWLALADLETKHGT----REALEKVLQKAVT 108
G+ A++++ L + LW DL KHG+ RE ++V+ +V+
Sbjct 1720 GNSEKAKSMFDKVLTTYPKRTDLWSVFIDLMVKHGSQKEVRELFDRVIHLSVS 1772
> ath:AT5G41770 crooked neck protein, putative / cell cycle protein,
putative; K12869 crooked neck
Length=705
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 0/72 (0%)
Query 47 RVWSEDAEECLSRGSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKA 106
+VW + A+ S+ AR+++ A+E +LWL A+ E K+ + V +A
Sbjct 93 QVWVKYAQWEESQKDYARARSVWERAIEGDYRNHTLWLKYAEFEMKNKFVNSARNVWDRA 152
Query 107 VTCCPKADVLWL 118
VT P+ D LW
Sbjct 153 VTLLPRVDQLWY 164
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query 4 GVAQTRDVWLKLAEEAESSGFLTTAQAIIK--ATMKVGVEGINAKRVWSEDAEECLSRGS 61
G + +WLK AE + F+ +A+ + T+ V+ + K + EE L G+
Sbjct 121 GDYRNHTLWLKYAEFEMKNKFVNSARNVWDRAVTLLPRVDQLWYKYI---HMEEIL--GN 175
Query 62 ITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPK 112
I AR ++ ++ + WL+ E ++ E + ++ V C PK
Sbjct 176 IAGARQIFERWMD-WSPDQQGWLSFIKFELRYNEIERARTIYERFVLCHPK 225
> mmu:18572 Pdcd11, 1110021I22Rik, ALG-4, Pdcd7, mKIAA0185; programmed
cell death 11; K14792 rRNA biogenesis protein RRP5
Length=1862
Score = 37.4 bits (85), Expect = 0.011, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 0/51 (0%)
Query 57 LSRGSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAV 107
+ + RAL T + + K ++W+AL +LE +G++E+L KV ++AV
Sbjct 1626 IEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAV 1676
Score = 31.2 bits (69), Expect = 0.83, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 0/50 (0%)
Query 65 ARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKAD 114
A LY L+R + +K++W+ A +VLQ+A+ C P +
Sbjct 1701 AGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKE 1750
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 0/48 (0%)
Query 60 GSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAV 107
G + A+A++ + L + +W D+ KHG++ A+ + ++ +
Sbjct 1766 GDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFERVI 1813
> cpv:cgd8_900 Ydr449cp/Utp6p; small (ribosomal) subunit (SSU)
processosome (contains U3 snoRNA). HAT repeats ; K14557 U3
small nucleolar RNA-associated protein 6
Length=970
Score = 36.2 bits (82), Expect = 0.025, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 0/57 (0%)
Query 68 LYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAKQQ 124
++ AL + + + LWL D K G+ +AL++ L A+ P V WL+ + ++
Sbjct 94 IFKRALRKFPSDEKLWLQNIDFCLKSGSSKALQRSLISALKHNPNNSVFWLIMSDRE 150
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query 46 KRVWSEDAEECLSRGSITVARALYTHALERLKTKKSLWLALADLETKHG-TREALEKVL 103
+++W ++ + CL GS + AL+ WL ++D E ++G ++EA +L
Sbjct 106 EKLWLQNIDFCLKSGSSKALQRSLISALKHNPNNSVFWLIMSDRELQNGNSKEARSAIL 164
> hsa:22984 PDCD11, ALG-4, ALG4, KIAA0185, NFBP, RRP5; programmed
cell death 11; K14792 rRNA biogenesis protein RRP5
Length=1871
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 0/42 (0%)
Query 66 RALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAV 107
RAL T + + K ++W+AL +LE +G++E+L KV ++AV
Sbjct 1644 RALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAV 1685
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 0/56 (0%)
Query 65 ARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMA 120
A LY L+R + +K++W+ + A +VLQ+A+ C P + + ++A
Sbjct 1710 AGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIA 1765
> ath:AT3G11964 RNA binding; K14792 rRNA biogenesis protein RRP5
Length=1896
Score = 35.4 bits (80), Expect = 0.051, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query 44 NAKRVWSEDAEECLSRGSITVARALYTHALERLKTKK-----SLWLALADLETKHGT--R 96
N+ VW + LS I AR++ AL + ++ ++W+A +LE +HG
Sbjct 1645 NSSFVWIKYMAFMLSLADIEKARSIAERALRTINIREEEEKLNIWVAYFNLENEHGNPPE 1704
Query 97 EALEKVLQKAVTCC-PKADVLWLMAAKQQ 124
E+++KV ++A C PK L L+ ++
Sbjct 1705 ESVKKVFERARQYCDPKKVYLALLGVYER 1733
> cel:C16A3.3 let-716; LEThal family member (let-716); K14792
rRNA biogenesis protein RRP5
Length=1743
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query 44 NAKRVWSEDAEECLSRGSITVARALYTHALE---RLKTKKSLWLALADLETKHGTREALE 100
N VW+ AE +++ AR L AL+ + + L A LE KHG E
Sbjct 1591 NQLEVWTLLAEHLMTQNDQKAARELLPRALKSAPKAQQHVQLISKFAQLEFKHGDAERGR 1650
Query 101 KVLQKAVTCCPKADVLWLMAAK 122
+L+ VT PK LWL+ A+
Sbjct 1651 TLLEGLVTAHPKKTDLWLVYAE 1672
> sce:YMR229C RRP5; RNA binding protein with preference for single
stranded tracts of U's involved in synthesis of both 18S
and 5.8S rRNAs; component of both the ribosomal small subunit
(SSU) processosome and the 90S preribosome; K14792 rRNA
biogenesis protein RRP5
Length=1729
Score = 34.7 bits (78), Expect = 0.075, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query 44 NAKRVWSEDAEECLSRGSITVARALYTHALERLK-----TKKSLWLALADLETKHGTREA 98
N+ VW L I AR L AL+ + K ++W+A+ +LE GT E
Sbjct 1473 NSSVVWMNYMAFQLQLSEIEKARELAERALKTINFREEAEKLNIWIAMLNLENTFGTEET 1532
Query 99 LEKVLQKA 106
LE+V +A
Sbjct 1533 LEEVFSRA 1540
> ath:AT5G45990 crooked neck protein, putative / cell cycle protein,
putative
Length=673
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 0/71 (0%)
Query 47 RVWSEDAEECLSRGSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKA 106
+VW + A+ S+ AR+++ ALE +LW+ A+ E K+ V ++
Sbjct 79 QVWVKYAKWEESQMDYARARSVWERALEGEYRNHTLWVKYAEFEMKNKFVNNARNVWDRS 138
Query 107 VTCCPKADVLW 117
VT P+ D LW
Sbjct 139 VTLLPRVDQLW 149
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 8/115 (6%)
Query 4 GVAQTRDVWLKLAEEAESSGFLTTAQAI--IKATMKVGVEGINAKRVWSEDAEECLSRGS 61
G + +W+K AE + F+ A+ + T+ V+ + K ++ E+ G+
Sbjct 107 GEYRNHTLWVKYAEFEMKNKFVNNARNVWDRSVTLLPRVDQLWEKYIYMEE-----KLGN 161
Query 62 ITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVL 116
+T AR ++ + +K+ WL E ++ E + ++ V C PK
Sbjct 162 VTGARQIFERWMNWSPDQKA-WLCFIKFELRYNEIERARSIYERFVLCHPKVSAF 215
> hsa:51340 CRNKL1, CLF, CRN, Clf1, HCRN, MSTP021, SYF3; crooked
neck pre-mRNA splicing factor-like 1 (Drosophila); K12869
crooked neck
Length=848
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 0/57 (0%)
Query 62 ITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWL 118
I AR++Y AL+ +LWL A++E K+ + +A+T P+ + W
Sbjct 258 IQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWY 314
> cel:M03F8.3 hypothetical protein; K12869 crooked neck
Length=747
Score = 33.9 bits (76), Expect = 0.12, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 0/61 (0%)
Query 58 SRGSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLW 117
S G I AR+++ AL+ S+WL A++E + V +A+T P+A W
Sbjct 98 SIGEIQRARSVFERALDVDHRSISIWLQYAEMEMRCKQINHARNVFDRAITIMPRAMQFW 157
Query 118 L 118
L
Sbjct 158 L 158
> dre:100334796 Pre-mRNA-processing factor 39-like
Length=707
Score = 33.1 bits (74), Expect = 0.20, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 0/70 (0%)
Query 49 WSEDAEECLSRGSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVT 108
W++ + C G + +R L R W ADLE + G E E+V ++ +
Sbjct 85 WTDLLQYCEQEGHMRASRQALNAFLLRYPLCYGYWKKFADLERRAGHNEKAEEVCEQGLK 144
Query 109 CCPKADVLWL 118
P + LW+
Sbjct 145 SIPLSVDLWI 154
> mmu:66877 Crnkl1, 1200013P10Rik, 5730590A01Rik, C80326, crn;
Crn, crooked neck-like 1 (Drosophila); K12869 crooked neck
Length=690
Score = 33.1 bits (74), Expect = 0.22, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 0/69 (0%)
Query 49 WSEDAEECLSRGSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVT 108
W + A+ S I AR++Y AL+ +LWL A++E K+ + +A+T
Sbjct 84 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAIT 143
Query 109 CCPKADVLW 117
P+ + W
Sbjct 144 TLPRVNQFW 152
> tgo:TGME49_053520 hypothetical protein
Length=1276
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 0/57 (0%)
Query 67 ALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAAKQ 123
AL L R + LWL+ ADL + G L+ L +A+ P+ LW+++A +
Sbjct 163 ALINRVLHRHSSSLPLWLSCADLLLQLGAGRLLQTFLLQAIRRFPRLAALWILSADR 219
> dre:393920 crnkl1, MGC55327, zgc:55327; crooked neck pre-mRNA
splicing factor-like 1 (Drosophila); K12869 crooked neck
Length=753
Score = 32.3 bits (72), Expect = 0.34, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query 49 WSEDAEECLSRGSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVT 108
W E +E + +R++Y AL+ +LWL A++E K+ + +A+T
Sbjct 89 WEESLQE------VQRSRSIYERALDVDHRNITLWLKYAEMEMKNRQVNHARNIWDRAIT 142
Query 109 CCPKADVLW 117
P+ + W
Sbjct 143 ILPRVNQFW 151
> ath:AT3G13210 crooked neck protein, putative / cell cycle protein,
putative
Length=657
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 0/53 (0%)
Query 66 RALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWL 118
R + + R + +W+ AD E K+ + V +AV+ P+ D LW
Sbjct 77 RKEFEDQIRRARLNTQVWVKYADFEMKNKSVNEARNVWDRAVSLLPRVDQLWY 129
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 0/65 (0%)
Query 47 RVWSEDAEECLSRGSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKA 106
+VW + A+ + S+ AR ++ A+ L LW +E K G ++L++
Sbjct 92 QVWVKYADFEMKNKSVNEARNVWDRAVSLLPRVDQLWYKFIHMEEKLGNIAGARQILERW 151
Query 107 VTCCP 111
+ C P
Sbjct 152 IHCSP 156
> cel:F25B4.5 hypothetical protein; K13217 pre-mRNA-processing
factor 39
Length=710
Score = 31.6 bits (70), Expect = 0.65, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query 46 KRVWSEDAEECLSRGSITV-ARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQ 104
KR++ ++ +EC R + Y H + W++ D E K G E ++ +
Sbjct 349 KRIYDKNMKECEIRAGFEANIKRPYFHVKPLDYPQLFNWMSYLDFEIKEGHEERVKILFD 408
Query 105 KAVTCCPKADVLWLMAAKQQW 125
+ + C + W+ A+ W
Sbjct 409 RCLIPCSLYEEFWIKYARWTW 429
> dre:393107 utp6, MGC174851, MGC55648, zgc:55648; UTP6, small
subunit (SSU) processome component, homolog (yeast); K14557
U3 small nucleolar RNA-associated protein 6
Length=594
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query 42 GINAKRVWSEDAEECLSRGSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEK 101
G + KR E+ E + +G +V R A + + LWL+ K G++ L K
Sbjct 76 GYHFKR---EEIEYPIIQGINSVFR----RATSKWQEDVQLWLSHVAFNKKWGSKTQLSK 128
Query 102 VLQKAVTCCPKADVLWLMAAK 122
+L + P LW+MAAK
Sbjct 129 ILLSMLAIHPDKPALWIMAAK 149
> cel:Y39A3CR.3 hypothetical protein
Length=975
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 0/39 (0%)
Query 75 RLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKA 113
+ +T+ +W+ LA+L G L KV+++A+T P +
Sbjct 807 KFRTQADVWMCLAELYINEGRHADLTKVIEQAITMFPSS 845
> bbo:BBOV_III004750 17.m07426; tetratricopeptide repeat domain
containing protein; K12869 crooked neck
Length=665
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 0/57 (0%)
Query 65 ARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMAA 121
AR+++ AL+ +LWL + E K+ A + + V+ P+ D W A
Sbjct 92 ARSVFERALQVDPNNVNLWLRYIETEMKNKNVNAARNLFDRVVSLLPRVDQFWFKYA 148
> mmu:216345 Zfc3h1, BC033596, Ccdc131, Psrc2; zinc finger, C3H1-type
containing
Length=1992
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 0/66 (0%)
Query 52 DAEECLSRGSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCP 111
+ E L S+ A + ALE K +W L +K GT+E ++++ + AV P
Sbjct 1376 NQNEGLCSESLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAP 1435
Query 112 KADVLW 117
W
Sbjct 1436 DYQSFW 1441
> pfa:PFD0180c CGI-201 protein, short form; K12869 crooked neck
Length=780
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 14/87 (16%)
Query 31 IIKATMKVGVEGINAKRVWSEDAEECLSRGSITVARALYTHALERLKTKKSLWLALADLE 90
+I +K G+ I K D E C R+++ AL T K+LWL ++E
Sbjct 70 MISTYIKYGLWEIKQK-----DIERC---------RSIFERALNIDYTNKNLWLKYIEVE 115
Query 91 TKHGTREALEKVLQKAVTCCPKADVLW 117
+ + +L++ V P ++ W
Sbjct 116 LINKNINSARNLLERVVLLLPLENIFW 142
> cel:C50F2.3 hypothetical protein; K12867 pre-mRNA-splicing factor
SYF1
Length=855
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 16/119 (13%)
Query 5 VAQTRDVWLKLAEEAESSGFLTTAQAIIKATMKVGVEGINA-KRVWSEDAEECLSRGSIT 63
V + RD+W+ LA+ E +G L A+ + + G++ VW AE +
Sbjct 397 VGKVRDLWIGLAKLYEDNGDLDAARKTFETAVISQFGGVSELANVWCAYAEMEMKHKRAK 456
Query 64 VARALYTHAL---------------ERLKTKKSLWLALADLETKHGTREALEKVLQKAV 107
A + A R+ LW AD E GT E+ KV K +
Sbjct 457 AALTVMQRACVVPKPGDYENMQSVQARVHRSPILWAMYADYEECCGTVESCRKVYDKMI 515
Score = 28.1 bits (61), Expect = 6.8, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query 47 RVWSEDAEECLSRGSITVARALYTHALERLKTKKSL--WLALADLETKHGTREALEKVLQ 104
R+W E + RG IT R ++ AL L + + W T H E +V +
Sbjct 118 RIWICYCEVMIKRGLITETRRVFDRALRSLPVTQHMRIWTLYIGFLTSHDLPETTIRVYR 177
Query 105 KAVTCCPKA 113
+ + PKA
Sbjct 178 RYLKMNPKA 186
> bbo:BBOV_IV005070 23.m05737; hypothetical protein; K14792 rRNA
biogenesis protein RRP5
Length=383
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query 18 EAESSGFLTTAQAIIKATMKVGVEGINAKRVWSEDAEECLSRGSITVARALYTHALER-- 75
E ESSG + + + +V G N+ +W E L GS+ AR + LER
Sbjct 98 ENESSG---SVETVFDFEKRVATGG-NSASLWIEYMAFHLRNGSLEGARQVVRRGLERID 153
Query 76 ---LKTKKSLWLALADLETKHGTREALEKVLQKAV 107
+ + +LW+A ++E +G R +++V Q+++
Sbjct 154 FRAISERLTLWVANINMECLYGDR--VKEVFQESL 186
> dre:368864 prpf39, fa10d07, si:dz261o22.3, wu:fa10d07; PRP39
pre-mRNA processing factor 39 homolog (yeast); K13217 pre-mRNA-processing
factor 39
Length=752
Score = 29.3 bits (64), Expect = 3.1, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Query 6 AQTRDVWLKLAEEAESSGFLTTAQAIIKATMKVGVEGINAKRVWSEDAEECLSRGSITVA 65
A + W+K A+ ES KA + N +W+ E+ +GSI A
Sbjct 459 ALYEEFWIKYAKYLESYSTEAVRHIYKKACTVHLPKKPNVHLLWAAFEEQ---QGSIDEA 515
Query 66 RALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVT 108
R++ + + L LE +HG E E +LQ A+T
Sbjct 516 RSILKAVEVSVPGLAMVRLRRVSLERRHGNMEEAEALLQDAIT 558
Score = 28.1 bits (61), Expect = 7.3, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 0/36 (0%)
Query 83 WLALADLETKHGTREALEKVLQKAVTCCPKADVLWL 118
W AD+E KHG + ++V ++ + P + LWL
Sbjct 203 WKKYADIERKHGYIQMADEVYRRGLQAIPLSVDLWL 238
> hsa:9733 SART3, DSAP1, KIAA0156, MGC138188, P100, RP11-13G14,
TIP110, p110, p110(nrb); squamous cell carcinoma antigen recognized
by T cells 3
Length=963
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query 60 GSITVARALYTHALERLKTKK-SLWLALADLETKHGTREALEKVLQKAVTC 109
++ AR L+ + R K ++WL +LE HG + K L +AV C
Sbjct 487 NNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHRAVQC 537
> mmu:53890 Sart3, AU045857, mKIAA0156; squamous cell carcinoma
antigen recognized by T-cells 3
Length=962
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query 60 GSITVARALYTHALERLKTKK-SLWLALADLETKHGTREALEKVLQKAVTC 109
++ AR L+ + R K ++WL +LE HG + K L +AV C
Sbjct 488 NNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHRAVQC 538
> tpv:TP02_0476 crooked neck protein; K12869 crooked neck
Length=657
Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query 48 VWSEDAEECLSRGSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAV 107
VW + +E AR+++ AL SLWL + E K+ + + + V
Sbjct 81 VWEANQQE------FRRARSIFERALLVDPNNPSLWLRYIETEMKNKNINSARNLFDRVV 134
Query 108 TCCPKADVLWLMAA 121
P+ D W A
Sbjct 135 CLLPRIDQFWFKYA 148
> dre:550347 ttc5, wu:fi33h05, wu:fy81e07, zgc:112059; tetratricopeptide
repeat domain 5
Length=446
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 25/87 (28%)
Query 43 INAKRVWSEDAEECLSR----------------------GSITVARALYTHALERLKTK- 79
+N +S+ AEECLSR G +T A+ +T AL++ K K
Sbjct 83 LNVAPEFSQAAEECLSRAVKLEPGLVEGWNTLGEQYWKKGDLTAAKTCFTGALQQSKNKV 142
Query 80 --KSLWLALADLETKHGTREALEKVLQ 104
+SL + L L + +E +++L+
Sbjct 143 SLRSLSMVLRQLPPEGDAQEQSKRILE 169
> hsa:196441 ZFC3H1, CCDC131, DKFZp686A0722, KIAA0546, MGC23401,
MGC90200, PSRC2; zinc finger, C3H1-type containing
Length=1989
Score = 28.9 bits (63), Expect = 4.2, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query 45 AKRVWSEDAEECLSRGSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQ 104
A + +++ EC S+ A + ALE K +W L +K GT++ ++++ +
Sbjct 1368 AYKYLNQNEGECSE--SLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKDEVQEMCE 1425
Query 105 KAVTCCPKADVLW 117
AV P W
Sbjct 1426 TAVEYAPDYQSFW 1438
> mmu:217827 6720454P05Rik; cDNA sequence BC002230
Length=1167
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query 66 RALYTHALERLKTKKS--LWLALADLETKHGTREALEKVLQKAVTCCPKADVLWLMA 120
RAL+ +A+ K + LW + G +E + V KA+ CP A VL++ A
Sbjct 1076 RALFENAIRSDKGNQCPLLWRMYLNFLVSLGNKERSKGVFYKALQSCPWAKVLYMDA 1132
> sce:YMR089C YTA12, RCA1; Component, with Afg3p, of the mitochondrial
inner membrane m-AAA protease that mediates degradation
of misfolded or unassembled proteins and is also required
for correct assembly of mitochondrial enzyme complexes (EC:3.4.24.-);
K08956 AFG3 family protein [EC:3.4.24.-]
Length=825
Score = 28.5 bits (62), Expect = 5.3, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 0/47 (0%)
Query 1 IGRGVAQTRDVWLKLAEEAESSGFLTTAQAIIKATMKVGVEGINAKR 47
+G G A+ RD++ E A S F+ AI KA K G N +R
Sbjct 422 VGVGAARVRDLFKTARENAPSIVFIDEIDAIGKARQKGNFSGANDER 468
> ath:AT3G17040 HCF107; HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107);
binding
Length=652
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 0/58 (0%)
Query 60 GSITVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLW 117
G AR L+ A + WLA A LE + A K+ +KAV PK W
Sbjct 319 GRYEQARYLFKQATICNSRSCASWLAWAQLEIQQERYPAARKLFEKAVQASPKNRFAW 376
> mmu:67439 Xab2, 0610041O14Rik, AV025587; XPA binding protein
2; K12867 pre-mRNA-splicing factor SYF1
Length=855
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 18/113 (15%)
Query 11 VWLKLAEEAESSGFLTTAQAIIKATMKVGVEGINA-KRVW---------SEDAEECLS-- 58
+W+ A+ E +G L A+ I++ KV + ++ VW E+ +E L
Sbjct 397 LWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALKLL 456
Query 59 --RGSITVARALYTHALERLKTK--KSL--WLALADLETKHGTREALEKVLQK 105
++ RA Y E ++ + KSL W LADLE GT ++ + V +
Sbjct 457 RKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDR 509
> hsa:56949 XAB2, DKFZp762C1015, HCNP, HCRN, NTC90, SYF1; XPA
binding protein 2; K12867 pre-mRNA-splicing factor SYF1
Length=855
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 18/113 (15%)
Query 11 VWLKLAEEAESSGFLTTAQAIIKATMKVGVEGINA-KRVW---------SEDAEECL--- 57
+W+ A+ E +G L A+ I++ KV + ++ VW E+ +E L
Sbjct 397 LWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALRLL 456
Query 58 -SRGSITVARALYTHALERLKTK--KSL--WLALADLETKHGTREALEKVLQK 105
++ RA Y E ++ + KSL W LADLE GT ++ + V +
Sbjct 457 RKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDR 509
> ath:AT3G51110 crooked neck protein, putative / cell cycle protein,
putative
Length=413
Score = 28.1 bits (61), Expect = 7.3, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 3/116 (2%)
Query 3 RGVAQTRDVWLKLAEEAESSGFLTTAQAIIKATMKVGVEGINAKRVWSEDAEECLSRGSI 62
RG VW++ A+ ES A+++ + ++ E +W + AE + S+
Sbjct 65 RGAKTNSQVWVRYADWEESQKDHDRARSVWERALED--ESYRNHTLWLKYAEFEMRNKSV 122
Query 63 TVARALYTHALERLKTKKSLWLALADLETKHGTREALEKVLQKAVTCCPKADVLWL 118
AR ++ A++ L W +E G + K+ ++ + P WL
Sbjct 123 NHARNVWDRAVKILPRVDQFWYKYIHMEEILGNIDGARKIFERWMDWSPDQQA-WL 177
> mmu:217664 Mgat2, AA407964, CDGS2, GLCNACTII, GNT-II, GNT2,
MGC37173; mannoside acetylglucosaminyltransferase 2 (EC:2.4.1.143);
K00736 alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
[EC:2.4.1.143]
Length=442
Score = 28.1 bits (61), Expect = 7.3, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 18/82 (21%)
Query 46 KRVWSEDAEEC-----LSRGSITVARALYTHALE-RLKTKKS----LWLALADLETKHGT 95
K++W +EC LS G+ T R+ Y A + +KT KS + LAL T
Sbjct 268 KKMWKLKQQECPGCDVLSLGTYTTIRSFYGIADKVDVKTWKSTEHNMGLAL--------T 319
Query 96 REALEKVLQKAVTCCPKADVLW 117
R+A +K+++ T C D W
Sbjct 320 RDAYQKLIECTDTFCTYDDYNW 341
Lambda K H
0.317 0.128 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2054672932
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
Posted date: Sep 17, 2011 11:19 AM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40