bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
164,496 sequences; 82,071,388 total letters
Query= Emax_2256_orf3
Length=52
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_023390 sec63 domain-containing DEAD/DEAH box helica... 68.9 3e-12
cel:Y46G5A.4 hypothetical protein; K12854 pre-mRNA-splicing he... 40.0 0.002
sce:YER172C BRR2, PRP44, RSS1, SLT22, SNU246; Brr2p (EC:3.6.1.... 38.5 0.005
dre:799690 fb63a09; wu:fb63a09 (EC:3.6.4.13); K12854 pre-mRNA-... 35.4 0.046
xla:100158290 snrnp200, ascc3l1; small nuclear ribonucleoprote... 35.0 0.052
dre:100332599 mutagen-sensitive 308-like 34.3 0.096
mmu:320632 Snrnp200, A330064G03Rik, Ascc3l1, BC011390, HELIC2,... 33.1 0.22
hsa:23020 SNRNP200, ASCC3L1, BRR2, FLJ11521, HELIC2, RP33, U5-... 33.1 0.22
hsa:652147 u5 small nuclear ribonucleoprotein 200 kDa helicase... 33.1 0.23
ath:AT1G20960 emb1507 (embryo defective 1507); ATP binding / A... 33.1 0.25
ath:AT2G42270 U5 small nuclear ribonucleoprotein helicase, put... 31.2 0.77
bbo:BBOV_III000950 17.m07111; sec63 domain containing protein ... 28.5 5.5
> tgo:TGME49_023390 sec63 domain-containing DEAD/DEAH box helicase,
putative ; K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]
Length=2198
Score = 68.9 bits (167), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/51 (64%), Positives = 43/51 (84%), Gaps = 1/51 (1%)
Query 1 SAAAEFGSLPLRPGEETVLKGIAQRIGLKLPA-SIDFTKASTKALVLLHAH 50
+A++EF +LPLRPGEE LKG+AQR+G++LPA S D K STKAL+LL+AH
Sbjct 1913 AASSEFSTLPLRPGEEGTLKGLAQRLGVRLPANSEDLNKPSTKALILLYAH 1963
Score = 28.5 bits (62), Expect = 5.1, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query 1 SAAAEFGSLPLRPGEETVLKGIAQRIGLKLPASIDFTKASTKALVLLHAH 50
S ++EF +P+R E+ L+ + +R+ + + S D T S+K VLL A+
Sbjct 1073 SLSSEFKYMPVREEEKVELQRLMERVPIPVKGSPDET--SSKVNVLLQAY 1120
> cel:Y46G5A.4 hypothetical protein; K12854 pre-mRNA-splicing
helicase BRR2 [EC:3.6.4.13]
Length=2145
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query 1 SAAAEFGSLPLRPGEETVLKGIAQRIGLKLPASIDFTKASTKALVLLHAH 50
SA++EFG++P+R E+ +L+ +A+R+ +L FT K +L+HAH
Sbjct 1849 SASSEFGNVPMRHKEDVILRQLAERLPGQLKNQ-KFTDPHVKVNLLIHAH 1897
> sce:YER172C BRR2, PRP44, RSS1, SLT22, SNU246; Brr2p (EC:3.6.1.-);
K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]
Length=2163
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 0/50 (0%)
Query 1 SAAAEFGSLPLRPGEETVLKGIAQRIGLKLPASIDFTKASTKALVLLHAH 50
S A EF S+PLR G+ +L +++R+ L+ P S K +LL A+
Sbjct 1884 STAVEFESVPLRKGDRALLVKLSKRLPLRFPEHTSSGSVSFKVFLLLQAY 1933
> dre:799690 fb63a09; wu:fb63a09 (EC:3.6.4.13); K12854 pre-mRNA-splicing
helicase BRR2 [EC:3.6.4.13]
Length=2134
Score = 35.4 bits (80), Expect = 0.046, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query 1 SAAAEFGSLPLRPGEETVLKGIAQRIGLKLPASIDFTKASTKALVLLHAH 50
S AAE+ ++P+R E+T+L+ +AQ++ KL + F K +LL AH
Sbjct 1846 SNAAEYKNIPIRHHEDTLLRQLAQKVPHKL-NNPKFNDPHVKTNLLLQAH 1894
> xla:100158290 snrnp200, ascc3l1; small nuclear ribonucleoprotein
200kDa (U5); K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]
Length=457
Score = 35.0 bits (79), Expect = 0.052, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query 1 SAAAEFGSLPLRPGEETVLKGIAQRIGLKLPASIDFTKASTKALVLLHAH 50
S AAE+ S+P+R E+ +L+ +AQ++ KL + F K +LL AH
Sbjct 171 SNAAEYESIPIRHHEDNLLRQLAQKVPHKL-TNPKFNDPHVKTNLLLQAH 219
> dre:100332599 mutagen-sensitive 308-like
Length=864
Score = 34.3 bits (77), Expect = 0.096, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query 1 SAAAEFGSLPLRPGEETVLKGIAQRIGLKL-PASIDFTKASTKALVLLHAH 50
S A E+ LP+R E+ + +AQR+ L++ P S D A TK +LL AH
Sbjct 684 SEAEEYAELPVRHNEDQLNSELAQRLPLQVNPHSYD--SAHTKTHLLLQAH 732
> mmu:320632 Snrnp200, A330064G03Rik, Ascc3l1, BC011390, HELIC2,
KIAA0788, U5-200-KD, U5-200KD; small nuclear ribonucleoprotein
200 (U5) (EC:3.6.4.13); K12854 pre-mRNA-splicing helicase
BRR2 [EC:3.6.4.13]
Length=2136
Score = 33.1 bits (74), Expect = 0.22, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query 1 SAAAEFGSLPLRPGEETVLKGIAQRIGLKLPASIDFTKASTKALVLLHAH 50
S AAE+ ++P+R E+ +L+ +AQ++ KL + F K +LL AH
Sbjct 1850 SNAAEYENIPIRHHEDNLLRQLAQKVPHKL-NNPKFNDPHVKTNLLLQAH 1898
> hsa:23020 SNRNP200, ASCC3L1, BRR2, FLJ11521, HELIC2, RP33, U5-200KD;
small nuclear ribonucleoprotein 200kDa (U5) (EC:3.6.4.13);
K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]
Length=2136
Score = 33.1 bits (74), Expect = 0.22, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query 1 SAAAEFGSLPLRPGEETVLKGIAQRIGLKLPASIDFTKASTKALVLLHAH 50
S AAE+ ++P+R E+ +L+ +AQ++ KL + F K +LL AH
Sbjct 1850 SNAAEYENIPIRHHEDNLLRQLAQKVPHKL-NNPKFNDPHVKTNLLLQAH 1898
> hsa:652147 u5 small nuclear ribonucleoprotein 200 kDa helicase-like
Length=1700
Score = 33.1 bits (74), Expect = 0.23, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query 1 SAAAEFGSLPLRPGEETVLKGIAQRIGLKLPASIDFTKASTKALVLLHAH 50
S AAE+ ++P+R E+ +L+ +AQ++ KL + F K +LL AH
Sbjct 1414 SNAAEYENIPIRHHEDNLLRQLAQKVPHKL-NNPKFNDPHVKTNLLLQAH 1462
> ath:AT1G20960 emb1507 (embryo defective 1507); ATP binding /
ATP-dependent helicase/ helicase/ nucleic acid binding / nucleoside-triphosphatase/
nucleotide binding; K12854 pre-mRNA-splicing
helicase BRR2 [EC:3.6.4.13]
Length=2171
Score = 33.1 bits (74), Expect = 0.25, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query 1 SAAAEFGSLPLRPGEETVLKGIA--QRIGLKLPASIDFTKASTKALVLLHAH 50
++A+E+ +P+RPGEE ++ + QR + P D KA LL AH
Sbjct 1877 TSASEYDMIPIRPGEEDTVRRLINHQRFSFENPKCTD---PHVKANALLQAH 1925
> ath:AT2G42270 U5 small nuclear ribonucleoprotein helicase, putative
Length=2172
Score = 31.2 bits (69), Expect = 0.77, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query 1 SAAAEFGSLPLRPGEETVLKGIA--QRIGLKLPASIDFTKASTKALVLLHAH 50
++A+E+ +P+RPGEE ++ + QR + P D K LL AH
Sbjct 1878 TSASEYDLIPIRPGEEDAVRRLINHQRFSFQNPRCTD---PRVKTSALLQAH 1926
> bbo:BBOV_III000950 17.m07111; sec63 domain containing protein
(EC:3.6.1.-); K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]
Length=2133
Score = 28.5 bits (62), Expect = 5.5, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query 1 SAAAEFGSLPLRPGEETVLKGIAQRIGLKLPASIDFTKASTKALVLLHAH 50
+A+AEF +P+R E L G+ +++ +P ++S+K VLL ++
Sbjct 1021 AASAEFRYIPVRDEERVELSGLMEKV--PIPIRGHGQESSSKVAVLLQSY 1068
Lambda K H
0.319 0.133 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2022656792
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
Posted date: Sep 17, 2011 11:19 AM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40