bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
164,496 sequences; 82,071,388 total letters
Query= Emax_2240_orf1
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
pfa:PF10_0057 regulator of nonsense transcripts, putative; K14... 216 5e-56
tgo:TGME49_091820 regulator of nonsense transcripts UPF1, puta... 212 7e-55
cel:Y48G8AL.6 smg-2; Suppressor with Morphological effect on G... 203 3e-52
mmu:19704 Upf1, B430202H16Rik, NORF1, PNORF-1, Rent1, Upflp; U... 202 7e-52
hsa:5976 UPF1, FLJ43809, FLJ46894, HUPF1, KIAA0221, NORF1, REN... 202 7e-52
xla:444289 MGC80941 protein; K14326 regulator of nonsense tran... 201 1e-51
dre:406783 upf1, rent1, wu:fi40f07, wu:fj48a01, zgc:55472; upf... 201 1e-51
ath:AT5G47010 LBA1; LBA1 (LOW-LEVEL BETA-AMYLASE 1); ATP bindi... 197 2e-50
sce:YMR080C NAM7, IFS2, MOF4, SUP113, UPF1; ATP-dependent RNA ... 190 2e-48
bbo:BBOV_III001810 17.m07178; regulator of nonsense transcripts 119 7e-27
ath:AT5G35970 DNA-binding protein, putative 108 1e-23
ath:AT5G37030 tRNA-splicing endonuclease positive effector-rel... 107 2e-23
ath:AT2G19120 tRNA-splicing endonuclease positive effector-rel... 103 3e-22
mmu:71643 4930422G04Rik, AI448607; RIKEN cDNA 4930422G04 gene 103 5e-22
tgo:TGME49_011690 ATP-dependent helicase, putative 102 7e-22
ath:AT5G37140 tRNA-splicing endonuclease positive effector-rel... 102 8e-22
ath:AT5G52090 tRNA-splicing endonuclease positive effector-rel... 102 9e-22
ath:AT4G30100 tRNA-splicing endonuclease positive effector-rel... 102 1e-21
ath:AT5G37150 hypothetical protein 101 1e-21
sce:YLR430W SEN1, CIK3, NRD2; Presumed helicase required for R... 100 4e-21
hsa:55345 C4orf21, DKFZp313L226, DKFZp434C0927, FLJ11331, FLJ3... 100 4e-21
ath:AT5G37160 tRNA-splicing endonuclease positive effector-rel... 99.4 8e-21
dre:559535 si:ch211-1n9.7; K10742 DNA replication ATP-dependen... 97.4 3e-20
ath:AT4G05540 tRNA-splicing endonuclease positive effector-rel... 95.9 8e-20
pfa:MAL7P1.12 erythrocyte membrane-associated antigen 95.5 1e-19
sce:YKL017C HCS1, DIP1; Hcs1p (EC:3.6.1.-) 95.1 1e-19
pfa:MAL13P1.13 conserved Plasmodium protein, unknown function 94.7 2e-19
ath:AT4G15570 MAA3; MAA3 (MAGATAMA 3) 94.4 2e-19
ath:AT1G05460 SDE3; SDE3 (SILENCING DEFECTIVE); RNA helicase 94.4 2e-19
dre:562474 setx, wu:fj92h09; senataxin; K10706 senataxin [EC:3... 92.0 1e-18
ath:AT2G03270 DNA-binding protein, putative 91.7 2e-18
sce:YER176W ECM32, HEL1, MTT1; DNA dependent ATPase/DNA helica... 90.9 3e-18
ath:AT1G65810 tRNA-splicing endonuclease positive effector-rel... 90.5 4e-18
tpv:TP04_0716 hypothetical protein 89.7 6e-18
hsa:1763 DNA2, DNA2L, FLJ10063, KIAA0083, MGC133297; DNA repli... 88.6 1e-17
tgo:TGME49_118620 tRNA-splicing endonuclease positive effector... 88.2 2e-17
hsa:3508 IGHMBP2, CATF1, FLJ34220, FLJ41171, HCSA, HMN6, SMARD... 87.8 2e-17
ath:AT1G65780 tRNA-splicing endonuclease positive effector-rel... 86.7 5e-17
mmu:327762 Dna2, Dna2l, E130315B21Rik, KIAA0083; DNA replicati... 86.7 5e-17
cpv:cgd1_830 sen1p/ NAM7 like superfamily I RNA helicase 85.5 1e-16
dre:768184 zgc:154086; K13983 putative helicase MOV10L1 [EC:3.... 84.3 2e-16
mmu:83456 Mov10l1, CHAMP, Csm; Moloney leukemia virus 10-like ... 83.6 4e-16
bbo:BBOV_III008170 17.m07714; hypothetical protein 82.8 7e-16
tpv:TP03_0654 hypothetical protein 82.0 1e-15
ath:AT1G08840 emb2411 (embryo defective 2411); ATP binding / A... 81.6 2e-15
hsa:23064 SETX, ALS4, AOA2, DKFZp781B151, FLJ12840, FLJ43459, ... 81.3 2e-15
dre:556484 ighmbp2l, MGC110400, si:ch211-238n5.2, zgc:110400; ... 81.3 2e-15
xla:378492 dna2, XDna2, dna2-A; DNA replication helicase 2 hom... 81.3 2e-15
cel:ZK1067.2 hypothetical protein 80.9 2e-15
mmu:269254 Setx, A130090N03, A930037J23Rik, AOA2, AW060766, Al... 80.1 4e-15
> pfa:PF10_0057 regulator of nonsense transcripts, putative; K14326
regulator of nonsense transcripts 1 [EC:3.6.4.-]
Length=1554
Score = 216 bits (549), Expect = 5e-56, Method: Composition-based stats.
Identities = 104/200 (52%), Positives = 139/200 (69%), Gaps = 6/200 (3%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
GA +V++GD Q+GP+++ ++AA AGL LF RL++L FRL VQYRMHP LS+FP
Sbjct 971 GAKQIVLVGDHCQLGPIIVCKKAANAGLGKSLFERLVMLGITPFRLEVQYRMHPALSEFP 1030
Query 61 SKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFYHSSTKEELSTTGTSYINRGE 120
S FY G LQNG++ KER Y P S +P+ P FFY+S+ EE+S +GTSY+NR E
Sbjct 1031 SYVFYDGSLQNGITLKEREY---PLKSFPWPNAKCPMFFYNSTGLEEMSASGTSYLNRSE 1087
Query 121 ASIVERLILMLVRNGATADKIGVITPYIGQRNYLRTLLQRN---PFSDYIEISSVDSFQG 177
AS +E+L+ L++ G +IGVITPY GQR Y+ +L Q+N S IE++SVD+FQG
Sbjct 1088 ASNMEKLVRTLLQCGLKPSQIGVITPYEGQRAYITSLFQKNISFQNSSDIEVASVDAFQG 1147
Query 178 REKDYIIFSCVRSNPNRSIG 197
REKD+I+ SCVRSN IG
Sbjct 1148 REKDFILLSCVRSNKKLGIG 1167
> tgo:TGME49_091820 regulator of nonsense transcripts UPF1, putative
(EC:3.1.11.5); K14326 regulator of nonsense transcripts
1 [EC:3.6.4.-]
Length=1449
Score = 212 bits (539), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 111/205 (54%), Positives = 140/205 (68%), Gaps = 9/205 (4%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
GA VV+IGD Q+GPVV+S++AAAAGL+ LF RLL L RL VQYRMHP LS FP
Sbjct 808 GAKQVVLIGDHCQLGPVVLSKKAAAAGLATSLFSRLLALGHRPLRLKVQYRMHPALSFFP 867
Query 61 SKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPS--LPSFFYHSSTKEELSTTGTSYINR 118
S FY G LQNGV+ ER Y FP P+ P FFYHS+ EE+S +GTSY+NR
Sbjct 868 SYFFYEGELQNGVTMTERTYFHQGPGDHRFPWPNEERPMFFYHSTASEEISGSGTSYVNR 927
Query 119 GEASIVERLILMLVRNGATADKIGVITPYIGQRNYLRTLLQRN------PFSDYIEISSV 172
EAS +E+++ L++ G A +IGVITPY GQR ++ +L QR F+D +E++SV
Sbjct 928 VEASNIEKIVTFLLKCGLKASQIGVITPYDGQRAHISSLFQRQTTLGQAAFAD-LEVASV 986
Query 173 DSFQGREKDYIIFSCVRSNPNRSIG 197
D+FQGREKD+I+ SCVRSN N IG
Sbjct 987 DAFQGREKDFILLSCVRSNSNTGIG 1011
> cel:Y48G8AL.6 smg-2; Suppressor with Morphological effect on
Genitalia family member (smg-2); K14326 regulator of nonsense
transcripts 1 [EC:3.6.4.-]
Length=1069
Score = 203 bits (516), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 106/202 (52%), Positives = 135/202 (66%), Gaps = 8/202 (3%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
G +V++GD Q+GPVVI ++AA AGLS LF RL+LL FRL VQYRMHP LS+FP
Sbjct 627 GVRQLVLVGDHCQLGPVVICKKAAIAGLSQSLFERLVLLGIRPFRLQVQYRMHPVLSEFP 686
Query 61 SKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFYHSSTKEELSTTGTSYINRGE 120
S FY G LQNGV+ +R T +P P+ P+FF+H S EELS +GTS++NR E
Sbjct 687 SNVFYDGSLQNGVTENDRHMT---GVDWHWPKPNKPAFFWHCSGSEELSASGTSFLNRTE 743
Query 121 ASIVERLILMLVRNGATADKIGVITPYIGQR----NYLRTLLQRN-PFSDYIEISSVDSF 175
A+ VE+L+ L++ G +IGVITPY GQR NY+ T N + +EI+SVD+F
Sbjct 744 AANVEKLVSKLIKAGVQPHQIGVITPYEGQRSFIVNYMHTQGTLNSKLYENVEIASVDAF 803
Query 176 QGREKDYIIFSCVRSNPNRSIG 197
QGREKDYII +CVRSN IG
Sbjct 804 QGREKDYIIVTCVRSNDILGIG 825
> mmu:19704 Upf1, B430202H16Rik, NORF1, PNORF-1, Rent1, Upflp;
UPF1 regulator of nonsense transcripts homolog (yeast); K14326
regulator of nonsense transcripts 1 [EC:3.6.4.-]
Length=1124
Score = 202 bits (514), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 100/202 (49%), Positives = 136/202 (67%), Gaps = 8/202 (3%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
GA ++++GD Q+GPVV+ ++AA AGLS LF RL++L RL VQYRMHP LS FP
Sbjct 659 GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFP 718
Query 61 SKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFYHSSTKEELSTTGTSYINRGE 120
S FY G LQNGV+A +RV +P P P FFY + +EE++++GTSY+NR E
Sbjct 719 SNIFYEGSLQNGVTAADRV---KKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTE 775
Query 121 ASIVERLILMLVRNGATADKIGVITPYIGQRNYLRTLLQ-----RNPFSDYIEISSVDSF 175
A+ VE++ L++ GA D+IG+ITPY GQR+YL +Q +EI+SVD+F
Sbjct 776 AANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAF 835
Query 176 QGREKDYIIFSCVRSNPNRSIG 197
QGREKD+II SCVR+N ++ IG
Sbjct 836 QGREKDFIILSCVRANEHQGIG 857
> hsa:5976 UPF1, FLJ43809, FLJ46894, HUPF1, KIAA0221, NORF1, RENT1,
pNORF1; UPF1 regulator of nonsense transcripts homolog
(yeast); K14326 regulator of nonsense transcripts 1 [EC:3.6.4.-]
Length=1118
Score = 202 bits (513), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 100/202 (49%), Positives = 136/202 (67%), Gaps = 8/202 (3%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
GA ++++GD Q+GPVV+ ++AA AGLS LF RL++L RL VQYRMHP LS FP
Sbjct 653 GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFP 712
Query 61 SKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFYHSSTKEELSTTGTSYINRGE 120
S FY G LQNGV+A +RV +P P P FFY + +EE++++GTSY+NR E
Sbjct 713 SNIFYEGSLQNGVTAADRV---KKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTE 769
Query 121 ASIVERLILMLVRNGATADKIGVITPYIGQRNYLRTLLQ-----RNPFSDYIEISSVDSF 175
A+ VE++ L++ GA D+IG+ITPY GQR+YL +Q +EI+SVD+F
Sbjct 770 AANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAF 829
Query 176 QGREKDYIIFSCVRSNPNRSIG 197
QGREKD+II SCVR+N ++ IG
Sbjct 830 QGREKDFIILSCVRANEHQGIG 851
> xla:444289 MGC80941 protein; K14326 regulator of nonsense transcripts
1 [EC:3.6.4.-]
Length=1098
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/202 (49%), Positives = 136/202 (67%), Gaps = 8/202 (3%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
GA ++++GD Q+GPVV+ ++AA AGLS LF RL++L RL VQYRMHP LS FP
Sbjct 632 GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFP 691
Query 61 SKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFYHSSTKEELSTTGTSYINRGE 120
S FY G LQNGV+A +RV +P P P FFY + +EE++++GTSY+NR E
Sbjct 692 SNIFYEGSLQNGVTAADRV---KKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTE 748
Query 121 ASIVERLILMLVRNGATADKIGVITPYIGQRNYLRTLLQ-----RNPFSDYIEISSVDSF 175
A+ VE++ L++ GA D+IG+ITPY GQR+YL +Q +EI+SVD+F
Sbjct 749 AANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAF 808
Query 176 QGREKDYIIFSCVRSNPNRSIG 197
QGREKD+II SCVR+N ++ IG
Sbjct 809 QGREKDFIILSCVRANEHQGIG 830
> dre:406783 upf1, rent1, wu:fi40f07, wu:fj48a01, zgc:55472; upf1
regulator of nonsense transcripts homolog (yeast); K14326
regulator of nonsense transcripts 1 [EC:3.6.4.-]
Length=1100
Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/202 (49%), Positives = 136/202 (67%), Gaps = 8/202 (3%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
GA ++++GD Q+GPVV+ ++AA AGLS LF RL++L RL VQYRMHP LS FP
Sbjct 633 GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFP 692
Query 61 SKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFYHSSTKEELSTTGTSYINRGE 120
S FY G LQNGV+A +R L +P P P FFY + +EE++++GTSY+NR E
Sbjct 693 SNIFYEGSLQNGVTAADR---LKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTE 749
Query 121 ASIVERLILMLVRNGATADKIGVITPYIGQRNYLRTLLQ-----RNPFSDYIEISSVDSF 175
A+ VE++ L++ GA D+IG+ITPY GQR+YL +Q +EI+SVD+F
Sbjct 750 AANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAF 809
Query 176 QGREKDYIIFSCVRSNPNRSIG 197
QGREKD+II SCVR+N ++ IG
Sbjct 810 QGREKDFIILSCVRANEHQGIG 831
> ath:AT5G47010 LBA1; LBA1 (LOW-LEVEL BETA-AMYLASE 1); ATP binding
/ DNA binding / RNA helicase/ hydrolase; K14326 regulator
of nonsense transcripts 1 [EC:3.6.4.-]
Length=1254
Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/202 (50%), Positives = 134/202 (66%), Gaps = 8/202 (3%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
G VV++GD Q+GPV++ ++AA AGL+ LF RL+ L RL VQYRMHP LS+FP
Sbjct 673 GVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVTLGIKPIRLQVQYRMHPALSEFP 732
Query 61 SKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFYHSSTKEELSTTGTSYINRGE 120
S +FY G LQNGV+ ER T P +P P+ P FFY +EE+S +GTSY+NR E
Sbjct 733 SNSFYEGTLQNGVTIIERQTTGIDFP---WPVPNRPMFFYVQLGQEEISASGTSYLNRTE 789
Query 121 ASIVERLILMLVRNGATADKIGVITPYIGQRNYLRTLLQRN-----PFSDYIEISSVDSF 175
A+ VE+L+ +++G +IGVITPY GQR Y+ + RN IE++SVDSF
Sbjct 790 AANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEVASVDSF 849
Query 176 QGREKDYIIFSCVRSNPNRSIG 197
QGREKDYII SCVRSN ++ IG
Sbjct 850 QGREKDYIILSCVRSNEHQGIG 871
> sce:YMR080C NAM7, IFS2, MOF4, SUP113, UPF1; ATP-dependent RNA
helicase of the SFI superfamily involved in nonsense mediated
mRNA decay; required for efficient translation termination
at nonsense codons and targeting of NMD substrates to P-bodies;
involved in telomere maintenance (EC:3.6.1.-); K14326
regulator of nonsense transcripts 1 [EC:3.6.4.-]
Length=971
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/204 (48%), Positives = 133/204 (65%), Gaps = 12/204 (5%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
GA V+++GD Q+GPV++ ++AA AGL LF RL+ L RL VQYRM+P LS+FP
Sbjct 589 GAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISLGHVPIRLEVQYRMNPYLSEFP 648
Query 61 SKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSP--SLPSFFYHSSTKEELSTTGTSYINR 118
S FY G LQNGV+ ++R P+ FP P +P F+ + +EE+S GTS++NR
Sbjct 649 SNMFYEGSLQNGVTIEQRTV-----PNSKFPWPIRGIPMMFWANYGREEISANGTSFLNR 703
Query 119 GEASIVERLILMLVRNGATADKIGVITPYIGQRNYLRTLLQRNPFSD-----YIEISSVD 173
EA ER+I L R+G ++IGVITPY GQR Y+ +Q N D +E++SVD
Sbjct 704 IEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVD 763
Query 174 SFQGREKDYIIFSCVRSNPNRSIG 197
+FQGREKDYII SCVR+N ++IG
Sbjct 764 AFQGREKDYIILSCVRANEQQAIG 787
> bbo:BBOV_III001810 17.m07178; regulator of nonsense transcripts
Length=1086
Score = 119 bits (298), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 109/205 (53%), Gaps = 12/205 (5%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLN-APVFRLSVQYRMHPGLSDF 59
G +V+IGD MQ+ P +IS +AA+ GLS L L+ N V L VQ RMHP +S+F
Sbjct 808 GCRQLVLIGDHMQLRPTIISTEAASEGLSSSLLENLVNANVGKVHLLDVQRRMHPSISEF 867
Query 60 PSKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFYHSSTK----EELSTTGTSY 115
P+ FY G + + + R NP +PSP+ F +S+ + S GTS
Sbjct 868 PNNQFYKGLITDAIEENSR----NPIKGFEWPSPAYNIAFIDASSGGPNGQFESVVGTSR 923
Query 116 INRGEASIVERLILMLVRNGATAD-KIGVITPYIGQRNYLRTLLQR--NPFSDYIEISSV 172
N E I+ L+ + G + IG++T Y Q+ LR + + + IEI SV
Sbjct 924 SNALEVEIILMLLKSFLDAGDVRESDIGILTAYDAQKWQLRRKVNQMFGINAQAIEIDSV 983
Query 173 DSFQGREKDYIIFSCVRSNPNRSIG 197
D FQG+EK+ I+FS VRSN ++ IG
Sbjct 984 DGFQGKEKELILFSGVRSNNHKDIG 1008
> ath:AT5G35970 DNA-binding protein, putative
Length=961
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 105/204 (51%), Gaps = 11/204 (5%)
Query 5 VVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVF--RLSVQYRMHPGLSDFPSK 62
++ GD Q+ PVV+S++A GL + L R L+ V +L+ QYRM+ ++ + SK
Sbjct 688 CILSGDPCQLAPVVLSRKALEGGLGVSLLERAASLHDGVLATKLTTQYRMNDVIAGWASK 747
Query 63 TFYGGFLQNGVSAKERVYTLNP--------KPSLSFPSPSLPSFFYHSSTKEELSTTGT- 113
YGG+L++ S + +P + L +P +E L GT
Sbjct 748 EMYGGWLKSAPSVASHLLIDSPFVKATWITQCPLVLLDTRMPYGSLSVGCEERLDPAGTG 807
Query 114 SYINRGEASIVERLILMLVRNGATADKIGVITPYIGQRNYLRTLLQRNPFSDYIEISSVD 173
S N GEA IV ++ L+ G + I V +PY+ Q LR L P +D +E++++D
Sbjct 808 SLYNEGEADIVVNHVISLIYAGVSPMAIAVQSPYVAQVQLLRERLDDFPVADGVEVATID 867
Query 174 SFQGREKDYIIFSCVRSNPNRSIG 197
SFQGRE D +I S VRSN ++G
Sbjct 868 SFQGREADAVIISMVRSNNLGAVG 891
> ath:AT5G37030 tRNA-splicing endonuclease positive effector-related;
K14326 regulator of nonsense transcripts 1 [EC:3.6.4.-]
Length=638
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 102/206 (49%), Gaps = 14/206 (6%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
G H ++IGD+ Q+ +V + Q A LF RL+LL L VQYRMHP +S FP
Sbjct 372 GLRHAILIGDEFQLPAMVHNDQCEKAKFGRSLFERLVLLGHKKHLLDVQYRMHPSISRFP 431
Query 61 SKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFYHSSTKEELSTTGTSYINRGE 120
K FYGG +++ + +E +Y F S SF KEE G S N E
Sbjct 432 YKEFYGGRIKDAANVQESIYQKRFLQGNMFGS---FSFINVGRGKEEFG-DGDSPKNMVE 487
Query 121 ASIVERLI---LMLVRNGATADKIGVITPYIGQRNYLRTLLQRNPFSDY------IEISS 171
++V +I + R +GVITPY GQ ++ + R+ +S + + S
Sbjct 488 VAVVSEIISNLFKVSRERKMKMSVGVITPYKGQVRAIQERI-RDKYSSLSGELFTVNVRS 546
Query 172 VDSFQGREKDYIIFSCVRSNPNRSIG 197
VD FQG E+D II S VRSN N +G
Sbjct 547 VDGFQGGEEDIIIISTVRSNSNGKVG 572
> ath:AT2G19120 tRNA-splicing endonuclease positive effector-related
Length=1090
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 104/204 (50%), Gaps = 23/204 (11%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
GA+ V++GD Q+ VIS+ A S LF R L P L+VQYRMHP + DFP
Sbjct 798 GAARCVLVGDPQQLPATVISKAAGTLLYSRSLFERFQLAGCPTLLLTVQYRMHPQIRDFP 857
Query 61 SKTFYGGFLQNG---VSAKERVYTLNP--KPSLSFPSPSLPSFFYHSSTKEELSTTGTSY 115
S+ FY G L++ SA + +Y +P +P L FF S +E SY
Sbjct 858 SRYFYQGRLKDSESISSAPDEIYYKDPVLRPYL---------FFNISHGRESHRGGSVSY 908
Query 116 INRGEASIVERLILMLVRN----GATADKIGVITPYIGQRNYLR----TLLQRNPFSDYI 167
N EA + + L + GA +GVITPY Q L+ L ++ + I
Sbjct 909 ENVDEARFCVGVYMHLQKTLKSLGAGKVSVGVITPYKLQLKCLKHEFGNALGQDELKE-I 967
Query 168 EISSVDSFQGREKDYIIFSCVRSN 191
I++VD+FQG+E+D II SCVR++
Sbjct 968 YINTVDAFQGQERDVIIMSCVRAS 991
> mmu:71643 4930422G04Rik, AI448607; RIKEN cDNA 4930422G04 gene
Length=1863
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 101/201 (50%), Gaps = 18/201 (8%)
Query 2 ASHVVVIGDQMQMGPVVISQQAAAA-GLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
++++GD Q+ P + AA GL LF RL L+ L QYR HP +S
Sbjct 1589 CEKLILVGDPKQLPPTIQGSDAAHENGLEQTLFDRLCLMGHKPVLLRTQYRCHPAISAIA 1648
Query 61 SKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFYHSSTKEELSTTGTSYINRGE 120
+ FY G L NG+S +ER P L + LP+ +++ T E S++N E
Sbjct 1649 NDLFYEGSLVNGISERER------SPVLEW----LPTLCFYNVTGAEQVERENSFVNVAE 1698
Query 121 ASIVERLILMLVRNGATADKIGVITPYIGQRNYLRTLLQR----NPFSDYIEISSVDSFQ 176
A+ +LI L+ +G + IGVIT Y Q + LL +P +++S+VD+FQ
Sbjct 1699 ATFTLKLIQSLMASGVESCMIGVITLYKSQMYKICNLLSAVDVGHPDVKAVQVSTVDAFQ 1758
Query 177 GREKDYIIFSCVRSNPNRSIG 197
G EK+ I SCVR+ R +G
Sbjct 1759 GAEKEITILSCVRT---RQVG 1776
> tgo:TGME49_011690 ATP-dependent helicase, putative
Length=1419
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 101/207 (48%), Gaps = 15/207 (7%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLN-APVFRLSVQYRMHPGLSDF 59
G + V+IGD Q+ P ++S +AAA GL + L R + AP+ L Q RMHP ++ F
Sbjct 1057 GCRNFVLIGDHKQLPPTILSPEAAARGLDVSLLERFVGSGIAPIQLLDEQRRMHPSIAYF 1116
Query 60 PSKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFY-----HSSTKEELSTTGTS 114
P+ FY G +Q+ V N P F PS S + ++ GTS
Sbjct 1117 PNLQFYDGKIQS-----RDVDDGNRPPVAGFRWPSQHSRVCLVDISAAGLSGSETSQGTS 1171
Query 115 YINRGEASIVERLILMLVRNGAT-ADKIGVITPYIGQRNYLRTLLQRN---PFSDYIEIS 170
N E + ++ + G+ +IGV+TPY Q+ LR + P IE+
Sbjct 1172 KYNAAEIDPIIAILQSVANEGSVLPSQIGVLTPYDAQKARLRKAINETFVPPACYQIEVD 1231
Query 171 SVDSFQGREKDYIIFSCVRSNPNRSIG 197
SVD FQG+EKD IIFS VRSN IG
Sbjct 1232 SVDGFQGKEKDLIIFSAVRSNARGEIG 1258
> ath:AT5G37140 tRNA-splicing endonuclease positive effector-related
Length=692
Score = 102 bits (254), Expect = 8e-22, Method: Composition-based stats.
Identities = 72/207 (34%), Positives = 107/207 (51%), Gaps = 21/207 (10%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
G H V+IGD++Q+ P ++ +A LF RL+LL L+VQYRMHP +S FP
Sbjct 409 GLRHAVLIGDELQL-PAMVHNEAK---FGRSLFERLVLLGHNKHLLNVQYRMHPSISRFP 464
Query 61 SKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFYHSSTKEELSTTGTSYINRGE 120
+K FYGG +++ + +E +Y F S S F + EE G S N E
Sbjct 465 NKEFYGGRIKDAANVQESIYQKRFLQGNMFGSFS----FINVGRGEEEFGDGHSPKNMVE 520
Query 121 ASIVERLILMLVRNGATAD---KIGVITPYIGQRNYLRTLLQR--NPFSDY-----IEIS 170
+++ +I L + + +GV++PY GQ +R + +R N +S + +
Sbjct 521 VAVISEIISNLFKVSSERRIKMSVGVVSPYKGQ---VRAIQERTTNKYSSLSGLFTLNVR 577
Query 171 SVDSFQGREKDYIIFSCVRSNPNRSIG 197
SVD FQG E+D II S VRSN N +G
Sbjct 578 SVDGFQGGEEDIIIISTVRSNGNGKVG 604
> ath:AT5G52090 tRNA-splicing endonuclease positive effector-related
Length=676
Score = 102 bits (254), Expect = 9e-22, Method: Composition-based stats.
Identities = 71/207 (34%), Positives = 102/207 (49%), Gaps = 16/207 (7%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
G H ++IGD+ Q+ +V ++ A LF RL+LL L VQYRMHP +S FP
Sbjct 388 GLRHAILIGDEFQLPAMVHNEMCEKAKFGRSLFERLVLLGHNKHLLDVQYRMHPSISRFP 447
Query 61 SKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFYHSSTKEELSTTGTSYINRGE 120
+K FYGG +++ + KE +Y F S SF KEE G S N E
Sbjct 448 NKEFYGGRIKDAENVKESIYQKRFLKGNMFDS---FSFINVGRGKEEFG-DGHSPKNMVE 503
Query 121 ASIVERLILMLVRNGATAD---KIGVITPYIGQRNYLR-------TLLQRNPFSDYIEIS 170
+++ +I L + +GV++PY GQ ++ + L F+ + +
Sbjct 504 VAVISEIISNLYKVSCERRMKVSVGVVSPYKGQMRAIQEKIGDKYSSLSGQQFT--LNVR 561
Query 171 SVDSFQGREKDYIIFSCVRSNPNRSIG 197
SVD FQG E+D II S VRSN N +G
Sbjct 562 SVDGFQGGEEDIIIISTVRSNGNGKVG 588
> ath:AT4G30100 tRNA-splicing endonuclease positive effector-related
Length=1311
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 102/209 (48%), Gaps = 22/209 (10%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
GA+ V++GD Q+ VIS+ A S LF R L P L+VQYRMHP + DFP
Sbjct 961 GAARCVLVGDPQQLPATVISKAAGTLLYSRSLFERFQLAGCPTLLLTVQYRMHPQIRDFP 1020
Query 61 SKTFYGGFLQNGVS---AKERVYTLNP--KPSLSFPSPSLPSFFYHSSTKEELSTTGTSY 115
S+ FY G L + S A + +Y + KP L FF S +E SY
Sbjct 1021 SRYFYQGRLTDSESVSTAPDEIYYKDSVLKPYL---------FFDISHGRESHRGGSVSY 1071
Query 116 INRGEASIVERLILMLVRN----GATADKIGVITPYIGQRNYLRTLLQRNPFSDYIE--- 168
N EA + L L R G +GVITPY Q L+ D ++
Sbjct 1072 ENIDEARFCVGVYLHLQRTLKSLGGGKVSVGVITPYKLQLKCLKIEFGNALSQDELQEIY 1131
Query 169 ISSVDSFQGREKDYIIFSCVRSNPNRSIG 197
I++VD+FQG+E+D II SCVR++ N +G
Sbjct 1132 INTVDAFQGQERDVIIMSCVRAS-NHGVG 1159
> ath:AT5G37150 hypothetical protein
Length=839
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 104/208 (50%), Gaps = 18/208 (8%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
G H ++IGD+ Q+ +V ++ A LF RL+LL L VQYRMHP +S FP
Sbjct 551 GLRHAILIGDEFQLPAMVHNEMCEKAKFGRSLFERLVLLGHNKHLLDVQYRMHPSISRFP 610
Query 61 SKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFYHSSTKEELSTTGTSYINRGE 120
+K FYGG +++ + KE +Y F S SF KEE G S N E
Sbjct 611 NKEFYGGRIKDAENVKESIYQKRFLQGNMFGS---FSFINVGRGKEEFG-DGHSPKNMVE 666
Query 121 ASIVERLILMLVRNGATAD---KIGVITPYIGQRNYLRTLLQR--NPFSDY------IEI 169
++V +I L + +GV++PY GQ +R + ++ + +S + +
Sbjct 667 VAVVSEIISNLFKVSCERRMKVSVGVVSPYKGQ---MRAIQEKIGDKYSSLSGQQFALNV 723
Query 170 SSVDSFQGREKDYIIFSCVRSNPNRSIG 197
SVD FQG E+D II S VRSN N +G
Sbjct 724 RSVDGFQGGEEDIIIISTVRSNSNGKVG 751
> sce:YLR430W SEN1, CIK3, NRD2; Presumed helicase required for
RNA polymerase II transcription termination and processing
of RNAs; homolog of Senataxin which causes Ataxia-Oculomotor
Apraxia 2 and a dominant form of amyotrophic lateral sclerosis
(EC:3.6.1.-)
Length=2231
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 102/202 (50%), Gaps = 12/202 (5%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
G +++GD Q+ P V+S A+ + LFVR+ ++P + L VQYRMHP +S FP
Sbjct 1607 GGKRCIMVGDPNQLPPTVLSGAASNFKYNQSLFVRMEKNSSP-YLLDVQYRMHPSISKFP 1665
Query 61 SKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFYHSSTKEELSTTGTSYINRGE 120
S FY G L++G + LN +P + FF S ++E + SY N E
Sbjct 1666 SSEFYQGRLKDGPG----MDILNKRPWHQLEPLAPYKFFDIISGRQEQNAKTMSYTNMEE 1721
Query 121 ASIVERLILMLVRNGAT----ADKIGVITPYIGQRNYLRTLLQR---NPFSDYIEISSVD 173
+ L+ L R KIG+I+PY Q +R R + I+ +++D
Sbjct 1722 IRVAIELVDYLFRKFDNKIDFTGKIGIISPYREQMQKMRKEFARYFGGMINKSIDFNTID 1781
Query 174 SFQGREKDYIIFSCVRSNPNRS 195
FQG+EK+ I+ SCVR++ +S
Sbjct 1782 GFQGQEKEIILISCVRADDTKS 1803
> hsa:55345 C4orf21, DKFZp313L226, DKFZp434C0927, FLJ11331, FLJ33237,
FLJ44066; chromosome 4 open reading frame 21
Length=2104
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 98/201 (48%), Gaps = 18/201 (8%)
Query 2 ASHVVVIGDQMQMGPVVISQQAAAA-GLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
++++GD Q+ P + AA GL LF RL L+ L QYR HP +S
Sbjct 1828 CEKLILVGDPKQLPPTIQGSDAAHENGLEQTLFDRLCLMGHKPILLRTQYRCHPAISAIA 1887
Query 61 SKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFYHSSTKEELSTTGTSYINRGE 120
+ FY G L NGV+ ER L P+L FY+ E++ S+ N E
Sbjct 1888 NDLFYKGALMNGVTEIERSPLLEWLPTLC---------FYNVKGLEQIE-RDNSFHNVAE 1937
Query 121 ASIVERLILMLVRNGATADKIGVITPYIGQRNYLRTLLQ----RNPFSDYIEISSVDSFQ 176
A+ +LI L+ +G IGVIT Y Q L LL +P +++S+VD+FQ
Sbjct 1938 ATFTLKLIQSLIASGIAGSMIGVITLYKSQMYKLCHLLSAVDFHHPDIKTVQVSTVDAFQ 1997
Query 177 GREKDYIIFSCVRSNPNRSIG 197
G EK+ II SCVR+ R +G
Sbjct 1998 GAEKEIIILSCVRT---RQVG 2015
> ath:AT5G37160 tRNA-splicing endonuclease positive effector-related
Length=871
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 106/209 (50%), Gaps = 19/209 (9%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
G H ++IGD+ Q+ +V +++ A LF RL+L+ L+VQYRMHP +S FP
Sbjct 584 GLCHALLIGDEYQLPAMVHNEECDKAKFGRSLFERLVLIGHSKHLLNVQYRMHPSISRFP 643
Query 61 SKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFYHSSTKEELSTTGTSYINRGE 120
+K FYGG + + + +E +Y K L SF KEE G S N E
Sbjct 644 NKEFYGGRITDAANVQESIY---EKRFLQGNMFGTFSFINVGRGKEEFG-DGHSPKNMVE 699
Query 121 ASIVERLILMLVRNGATADK---IGVITPYIGQRNYLRTLLQR-----NPFSD----YIE 168
+++ ++I L + + + +GVI+PY GQ +R + +R N S +
Sbjct 700 VAVISKIISNLFKVSSQRKQKMSVGVISPYKGQ---VRAIQERVGDKYNSLSVDQLFTLN 756
Query 169 ISSVDSFQGREKDYIIFSCVRSNPNRSIG 197
+ SVD FQG E D II S VR N N ++G
Sbjct 757 VQSVDGFQGGEVDVIIISTVRCNVNGNVG 785
> dre:559535 si:ch211-1n9.7; K10742 DNA replication ATP-dependent
helicase Dna2 [EC:3.6.4.12]
Length=1397
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 25/218 (11%)
Query 2 ASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFPS 61
A V++GD Q+ P+V + +A + G+ LF RL V +L+VQYRM+ + +
Sbjct 1096 AQRFVLVGDHQQLPPIVQNAEARSLGMDESLFKRLEHHRDAVVQLNVQYRMNSAIMSLSN 1155
Query 62 KTFYGGFLQNG--------------VSAKE--RVYTLNPKPSLSFPS---PSLPSFFYHS 102
Y G L+ G A+E +Y P+ S + P+ P F +
Sbjct 1156 ALMYEGRLECGSEKTANAVLQLPSRAQAEEELELYVCQPQYSAWVQAALEPNSPVCFLDT 1215
Query 103 S---TKEELSTTGTSYINRGEASIVERLILMLVRNGATADKIGVITPYIGQRNYLRTLLQ 159
S E + +G S N EA +V+ L+ +L++ G A IGVI PY Q + +LLQ
Sbjct 1216 SEVPAPETVEKSGIS--NHTEAVLVQGLVTLLLKAGCRACDIGVIAPYRQQLKVISSLLQ 1273
Query 160 RNPFSDYIEISSVDSFQGREKDYIIFSCVRSNPNRSIG 197
+ F +E+++VD +QGR+K II S VRSN ++G
Sbjct 1274 GDAFK-ALEVNTVDKYQGRDKSVIIVSFVRSNAEGNLG 1310
> ath:AT4G05540 tRNA-splicing endonuclease positive effector-related
Length=689
Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 104/212 (49%), Gaps = 26/212 (12%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
G H V+IGD++Q+ +V S+ A LF RL L L+VQYRMHP +S FP
Sbjct 455 GLHHAVLIGDELQLPAMVQSEVCEKAKFVRSLFERLDSLGHKKHLLNVQYRMHPSISLFP 514
Query 61 SKTFYGGFLQNGVSAKERVYTL-----NPKPSLSFPSPSLPSFFYHSSTKEELSTTGTSY 115
+ FYGG + + KE Y N S SF + L KEE G S
Sbjct 515 NMEFYGGKISDAEIVKESTYQKRFLQGNMFGSFSFINVGLG--------KEEFG-DGHSP 565
Query 116 INRGEASIVERLILMLVR---NGATADKIGVITPYIGQRNYLR-------TLLQRNPFSD 165
N E ++V ++ L++ T +GVI+PY Q + ++ T + N F+
Sbjct 566 KNMVEIAVVSEILTNLLKVSSETKTKMSVGVISPYKAQVSAIQERIGDKYTSVSDNLFT- 624
Query 166 YIEISSVDSFQGREKDYIIFSCVRSNPNRSIG 197
+ + SVD FQG E+D II S VRSN N +IG
Sbjct 625 -LNVRSVDGFQGGEEDIIIISTVRSNCNGNIG 655
> pfa:MAL7P1.12 erythrocyte membrane-associated antigen
Length=2283
Score = 95.5 bits (236), Expect = 1e-19, Method: Composition-based stats.
Identities = 71/207 (34%), Positives = 106/207 (51%), Gaps = 18/207 (8%)
Query 3 SHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLN-APVFRLSVQYRMHPGLSDFPS 61
+++V+IGD Q+ P +IS A GL L R ++ APV L+ Q RMH + FP+
Sbjct 1945 NNLVLIGDHKQLPPTIISPDAIKLGLDKSLLERFVMAKIAPVHLLNTQRRMHLSICVFPN 2004
Query 62 KTFYGGFLQNGVSAKERVYTL------NPKPSLSFPSPSLPSFFYHSSTKEELSTTGTSY 115
FY L+ +E + NPK L+F S+ +K E + GTS
Sbjct 2005 FHFYDNKLKTANVTEENRPIIKGFLWPNPKCRLAFIDVSIGK----PGSKFE-NAYGTSK 2059
Query 116 INRGEASIVERLILMLVRNG-ATADKIGVITPYIGQRNYLRTLLQRNPFS----DYIEIS 170
N E + ++ ++ G + D+IG++T Y Q+ L+ +Q + FS IEI
Sbjct 2060 FNLYEIEPLITVLKSIINEGCVSVDEIGILTAYDAQKMKLKKAVQ-DAFSYEASHRIEID 2118
Query 171 SVDSFQGREKDYIIFSCVRSNPNRSIG 197
S+D FQG+EKD I+FS VRSN N +G
Sbjct 2119 SIDGFQGKEKDLILFSAVRSNANNELG 2145
> sce:YKL017C HCS1, DIP1; Hcs1p (EC:3.6.1.-)
Length=683
Score = 95.1 bits (235), Expect = 1e-19, Method: Composition-based stats.
Identities = 69/208 (33%), Positives = 104/208 (50%), Gaps = 16/208 (7%)
Query 5 VVVIGDQMQMGPVVISQ--QAAAAGLSIPLFVRLLLL---NAPVFRLSVQYRMHPGLSDF 59
+V+ GD Q+ P + ++ + L LF R++ + V L+VQYRM+ + +F
Sbjct 419 LVLAGDNKQLPPTIKTEDDKNVIHNLETTLFDRIIKIFPKRDMVKFLNVQYRMNQKIMEF 478
Query 60 PSKTFYGGFLQNGVSAKERVY----TLNPKPSLSFPSPSLPSFFYHSS------TKEELS 109
PS + Y G L + R+ T++ PS +P +Y + T +E +
Sbjct 479 PSHSMYNGKLLADATVANRLLIDLPTVDATPSEDDDDTKIPLIWYDTQGDEFQETADEAT 538
Query 110 TTGTSYINRGEASIVERLILMLVRNGATADKIGVITPYIGQRNYLRTLLQRNPFSDYIEI 169
G+ Y N GE +IV+ I L + IGVI+PY Q ++L+ L+ IEI
Sbjct 539 ILGSKY-NEGEIAIVKEHIENLRSFNVPENSIGVISPYNAQVSHLKKLIHDELKLTDIEI 597
Query 170 SSVDSFQGREKDYIIFSCVRSNPNRSIG 197
S+VD FQGREKD II S VRSN +G
Sbjct 598 STVDGFQGREKDVIILSLVRSNEKFEVG 625
> pfa:MAL13P1.13 conserved Plasmodium protein, unknown function
Length=2743
Score = 94.7 bits (234), Expect = 2e-19, Method: Composition-based stats.
Identities = 69/212 (32%), Positives = 101/212 (47%), Gaps = 34/212 (16%)
Query 4 HVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFPSKT 63
+++++GD Q+ S G S LF RLLL N L++QYRM P + FP+
Sbjct 2227 NIIMVGDPKQLPATTFSSDCRKYGYSRSLFERLLLCNVSSVLLNIQYRMRPEICYFPNNY 2286
Query 64 FYGGFLQNG--VSAKERVYTLNPKPSLSFPSPSLPSFFYHSSTKEELSTTGTSYINRGEA 121
FY G ++N +S K Y L F + + + E T SYIN EA
Sbjct 2287 FYNGLIKNADILSNKPFFYYFQ---DLDF----FGCYKFINIDGIESMTYNKSYINYVEA 2339
Query 122 SIVERLILMLVRNGATADK--------------------IGVITPYIGQRNYLRTLLQRN 161
+ +L+L ++N + + IG+I PY Q + +R + + +
Sbjct 2340 YFIYKLVLY-IKNIISKHQDHTKSVPNLYKLPVHFSLKDIGIICPYQSQVHLIRNMFEES 2398
Query 162 PFSDYI---EISSVDSFQGREKDYIIFSCVRS 190
F D I E+S+VD+FQGREK IIFSCVRS
Sbjct 2399 -FEDKIPFPEVSTVDAFQGREKHIIIFSCVRS 2429
> ath:AT4G15570 MAA3; MAA3 (MAGATAMA 3)
Length=818
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 96/205 (46%), Gaps = 15/205 (7%)
Query 2 ASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFPS 61
V ++GD Q+ VIS A +G +F RL PV L QYRMHP + FPS
Sbjct 508 CKQVFLVGDPKQLPATVISTVAQDSGYGTSMFERLQKAGYPVKMLKTQYRMHPEIRSFPS 567
Query 62 KTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFY--HSSTKEELSTTGTSYINRG 119
K FY G L++G S E T + F P F+ H + + S +N
Sbjct 568 KQFYEGALEDG-SDIEAQTTRDWHKYRCFG----PFCFFDIHEGKESQHPGATGSRVNLD 622
Query 120 EASIV----ERLILMLVRNGATADKIGVITPYIGQRNYLRTLLQR---NPFSDYIEISSV 172
E V RL+ M +++ ++ +I+PY Q + + ++I++V
Sbjct 623 EVEFVLLIYHRLVTMYPELKSSS-QLAIISPYNYQVKTFKDRFKEMFGTEAEKVVDINTV 681
Query 173 DSFQGREKDYIIFSCVRSNPNRSIG 197
D FQGREKD IFSCVR+N N IG
Sbjct 682 DGFQGREKDVAIFSCVRANENGQIG 706
> ath:AT1G05460 SDE3; SDE3 (SILENCING DEFECTIVE); RNA helicase
Length=1002
Score = 94.4 bits (233), Expect = 2e-19, Method: Composition-based stats.
Identities = 72/195 (36%), Positives = 99/195 (50%), Gaps = 15/195 (7%)
Query 5 VVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLN-------APVFRLSVQYRMHPGLS 57
VV+ GD Q+GPV+ S+ A + GL RL + V +L YR HP +
Sbjct 569 VVLAGDPRQLGPVIYSRDAESLGLGKSYLERLFECDYYCEGDENYVTKLVKNYRCHPEIL 628
Query 58 DFPSKTFYGGFLQNGVSAKERVYTLNPKPSLSF-PSPSLPSFFYHSSTKEELSTTGTSYI 116
D PSK FY G L V++KE T + SL+F P+ P FY +E S+
Sbjct 629 DLPSKLFYDGEL---VASKED--TDSVLASLNFLPNKEFPMVFYGIQGCDEREGNNPSWF 683
Query 117 NRGEASIVERLILMLVRNGATADK-IGVITPYIGQRNYLRTLLQRNPFSDYIEISSVDSF 175
NR E S V I L N ++ IGVITPY Q ++ +L R ++ +++ SV+ F
Sbjct 684 NRIEISKVIETIKRLTANDCVQEEDIGVITPYRQQVMKIKEVLDRLDMTE-VKVGSVEQF 742
Query 176 QGREKDYIIFSCVRS 190
QG+EK II S VRS
Sbjct 743 QGQEKQVIIISTVRS 757
> dre:562474 setx, wu:fj92h09; senataxin; K10706 senataxin [EC:3.6.4.-]
Length=2046
Score = 92.0 bits (227), Expect = 1e-18, Method: Composition-based stats.
Identities = 69/198 (34%), Positives = 104/198 (52%), Gaps = 24/198 (12%)
Query 5 VVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLL----NA---PVFRLSVQYRMHPGLS 57
V+++GD Q+ P V+SQ+A G L RL N+ P+ LS+QYRMHP +
Sbjct 1660 VILVGDPNQLPPTVVSQKAKEFGFDQSLMARLCKSLHPSNSKLPPILLLSMQYRMHPDIC 1719
Query 58 DFPSKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSF--FYHSSTKEELSTTGTSY 115
+FPSK Y L+N ++ + SLS+P F TKE S+
Sbjct 1720 EFPSKYIYNSALKNDCETAQK------RCSLSWPFKPYKVFDVMDGRETKER-----DSF 1768
Query 116 INRGEASIVERLILMLVRNGATADKIGVITPYIGQRNYLRTLLQRNPFSD--YIEISSVD 173
IN E S+V L+ +L + A ++GVITPY Q++ + ++ + + +E+ +VD
Sbjct 1769 INHKEVSLVGLLLKLLCKEQAV--RVGVITPYNAQKHRILDAIKTSGINKQLQVEVDTVD 1826
Query 174 SFQGREKDYIIFSCVRSN 191
FQGRE D II SCVR++
Sbjct 1827 GFQGREMDCIIVSCVRAS 1844
> ath:AT2G03270 DNA-binding protein, putative
Length=639
Score = 91.7 bits (226), Expect = 2e-18, Method: Composition-based stats.
Identities = 67/199 (33%), Positives = 92/199 (46%), Gaps = 3/199 (1%)
Query 2 ASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFR--LSVQYRMHPGLSDF 59
S ++ GD +Q+ P + S +A GL LF RL L + L+VQYRMH + ++
Sbjct 386 GSRCILAGDHLQLPPTIQSAEAERKGLGRTLFERLADLYGDEIKSMLTVQYRMHELIMNW 445
Query 60 PSKTFYGGFLQNGVS-AKERVYTLNPKPSLSFPSPSLPSFFYHSSTKEELSTTGTSYINR 118
SK Y + S A ++ L S +L EE S N
Sbjct 446 SSKELYDNKITAHSSVASHMLFDLENVTKSSSTEATLLLVDTAGCDMEEKKDEEESTYNE 505
Query 119 GEASIVERLILMLVRNGATADKIGVITPYIGQRNYLRTLLQRNPFSDYIEISSVDSFQGR 178
GEA + L+ +G IG+ITPY Q LR L + +EIS+VD FQGR
Sbjct 506 GEAEVAMAHAKRLMESGVQPSDIGIITPYAAQVMLLRILRGKEEKLKDMEISTVDGFQGR 565
Query 179 EKDYIIFSCVRSNPNRSIG 197
EK+ II S VRSN + +G
Sbjct 566 EKEAIIISMVRSNSKKEVG 584
> sce:YER176W ECM32, HEL1, MTT1; DNA dependent ATPase/DNA helicase
belonging to the Dna2p- and Nam7p-like family of helicases
that is involved in modulating translation termination;
interacts with the translation termination factors, localized
to polysomes (EC:3.6.1.-)
Length=1121
Score = 90.9 bits (224), Expect = 3e-18, Method: Composition-based stats.
Identities = 74/247 (29%), Positives = 112/247 (45%), Gaps = 68/247 (27%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLL---LLNAPVFRLSVQYRMHPGLS 57
G + V +GD+ Q+ S + L LF R+L P+ L QYRMHP +S
Sbjct 838 GIRNFVFVGDEKQL-----SSFSNIPQLETSLFERVLSNGTYKNPLM-LDTQYRMHPKIS 891
Query 58 DFPSKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFYH---------SSTKEEL 108
+FP K Y G L++GV+ +++ ++P P FFY ST+ ++
Sbjct 892 EFPIKKIYNGELKDGVTDEQK----------AWPGVQHPLFFYQCDLGPESRVRSTQRDI 941
Query 109 STTGTSYINRGE-ASIVERLILMLVRNGATADKIGVITPYIGQRNYLRTLLQRNPF---- 163
G +Y N+ E IV+ + ++++ ++IGVITPY QR+ L +L +N
Sbjct 942 --VGFTYENKHECVEIVKIIQILMLDKKVPLEEIGVITPYSAQRDLLSDILTKNVVINPK 999
Query 164 -----SDYIEI----------------------------SSVDSFQGREKDYIIFSCVRS 190
+Y EI ++VDSFQG EK +IIFSCVR+
Sbjct 1000 QISMQQEYDEIELFNAAGSQGTAGSLQNNVINIINGLHVATVDSFQGHEKSFIIFSCVRN 1059
Query 191 NPNRSIG 197
N IG
Sbjct 1060 NTENKIG 1066
> ath:AT1G65810 tRNA-splicing endonuclease positive effector-related
Length=1050
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 100/203 (49%), Gaps = 10/203 (4%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
G H ++IGD+ Q+ ++ S A+ A L LF RL+LL L++QYRMHP +S FP
Sbjct 577 GLQHAILIGDEKQLPAMIKSNIASEADLGRSLFERLVLLGHNKQLLNMQYRMHPSISIFP 636
Query 61 SKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFYHSSTKEELSTTGTSYINRGE 120
++ FY + + S + R Y P + P F + + E G S N E
Sbjct 637 NREFYDMKILDAPSVRLRSYEKKFLPEKMYG----PYSFINIAYGREQFGEGYSSKNLVE 692
Query 121 ASIVERLILMLV---RNGATADKIGVITPYIGQRNYLRTLLQRNPFSD---YIEISSVDS 174
S+V ++ L R +GVI+PY Q ++ + ++ + + SVD
Sbjct 693 VSVVAEIVSKLYSVSRKTGRTISVGVISPYKAQVFAIQERIGEKYNTEGTFTVSVRSVDG 752
Query 175 FQGREKDYIIFSCVRSNPNRSIG 197
FQG E+D II S VRSN N +IG
Sbjct 753 FQGGEEDIIIISTVRSNGNGAIG 775
> tpv:TP04_0716 hypothetical protein
Length=944
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 103/217 (47%), Gaps = 34/217 (15%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
G +++GD Q+ V S+ A LF RL L PV L +QYRM P ++ FP
Sbjct 570 GCKRAILVGDPCQLSATVCSKVAIQLNYDQSLFKRLQLCGYPVNFLKLQYRMDPLITRFP 629
Query 61 SKTFYGGFLQNGVSAKERVYTLNPKPSL-SFPSPSLPSFFYHSSTKEELSTTGTSYINRG 119
S FY L ++AKE T P+ FP P+ F+ ++E +S TSY+N
Sbjct 630 SMYFYQNQL---INAKET--TSAPEEDWRQFPLLR-PTVFFALDSQESMS--DTSYVNEM 681
Query 120 EASIVERLILMLVR---------NGATADKIGVITPYIGQRNYLR-TLLQRNPF------ 163
E +V +L+ ++V + KI VI+PY Q L+ T+ QR
Sbjct 682 EVDLVCQLLDIIVEIFSSIPGITEEEISKKIAVISPYAAQAEILKNTISQRIKILPTLAS 741
Query 164 ---------SDYIEISSVDSFQGREKDYIIFSCVRSN 191
+ I +S+VD FQG EK+ IIFS VR+N
Sbjct 742 QFRALAGAKTHQIYVSTVDGFQGMEKEIIIFSAVRTN 778
> hsa:1763 DNA2, DNA2L, FLJ10063, KIAA0083, MGC133297; DNA replication
helicase 2 homolog (yeast) (EC:3.6.4.12); K10742 DNA
replication ATP-dependent helicase Dna2 [EC:3.6.4.12]
Length=1060
Score = 88.6 bits (218), Expect = 1e-17, Method: Composition-based stats.
Identities = 64/214 (29%), Positives = 105/214 (49%), Gaps = 27/214 (12%)
Query 6 VVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFPSKTFY 65
V++GD Q+ P+V++++A A G+S LF RL + V +L+VQYRM+ + +K Y
Sbjct 783 VLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKSAVVQLTVQYRMNSKIMSLSNKLTY 842
Query 66 GGFLQNGVSAKERV-------------------YTLNPKPSLSFPSPSLPSFFYHSS--- 103
G L+ G Y+ NP F P+ P F ++
Sbjct 843 EGKLECGSDKVANAVINLRHFKDVKLELEFYADYSDNPWLMGVF-EPNNPVCFLNTDKVP 901
Query 104 TKEELSTTGTSYINRGEASIVERLILMLVRNGATADKIGVITPYIGQRNYLRTLLQRNPF 163
E++ G S N EA ++ L + V+ G + IG+I PY Q + LL R+
Sbjct 902 APEQVEKGGVS--NVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIINDLLARS-- 957
Query 164 SDYIEISSVDSFQGREKDYIIFSCVRSNPNRSIG 197
+E+++VD +QGR+K ++ S VRSN + ++G
Sbjct 958 IGMVEVNTVDKYQGRDKSIVLVSFVRSNKDGTVG 991
> tgo:TGME49_118620 tRNA-splicing endonuclease positive effector
protein, putative (EC:3.1.11.5)
Length=1193
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 108/222 (48%), Gaps = 34/222 (15%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
G ++++GD Q+ + S+ A LF RL V LSVQYRMHP +S F
Sbjct 862 GCRRLILVGDPRQLPATIFSRVAIQHRYDQSLFQRLEAAGHKVNMLSVQYRMHPCISKFA 921
Query 61 SKTFYGGFLQNGVSAKERVYTL--NPKPSLSFP--SPSLPSFFYHSSTKEELSTTGTSYI 116
S TFY QN + E + L P P S P P L F ++S EE TS I
Sbjct 922 SSTFY----QNQLQDAENIVGLVRPPIPWYSIPIFKP-LVFFAINTSHTEE----NTSLI 972
Query 117 NRGEASIVERLILMLVR------NGATADKIGVITPYIGQRNYLRTLLQRN-PFSDY--- 166
N EA+ V +L+ +L R K+ +I+PY Q + LR ++ +D
Sbjct 973 NVDEANFVCQLVDLLKRIFVALGRTDWEGKLAIISPYAQQVSLLRQRIKAQLRITDNKAC 1032
Query 167 -IEISSVDSFQGREKDYIIFSCVR---SNP-------NRSIG 197
I++++VD FQG+EKD IIFS VR +NP N SIG
Sbjct 1033 PIDVNTVDGFQGQEKDLIIFSAVRAQYTNPTTAQTKLNTSIG 1074
> hsa:3508 IGHMBP2, CATF1, FLJ34220, FLJ41171, HCSA, HMN6, SMARD1,
SMUBP2; immunoglobulin mu binding protein 2 (EC:3.6.4.13
3.6.4.12)
Length=993
Score = 87.8 bits (216), Expect = 2e-17, Method: Composition-based stats.
Identities = 73/207 (35%), Positives = 103/207 (49%), Gaps = 20/207 (9%)
Query 2 ASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLL-LNAPVFR-LSVQYRMHPGLSDF 59
A ++ GD Q+ P +S +AA AGLS+ L RL A V R L+VQYRMH + +
Sbjct 392 ARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRW 451
Query 60 PSKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPS-LPSFFYHSS-------TKEELSTT 111
S T Y G L S + L P ++ + +P ++ +E+ +
Sbjct 452 ASDTMYLGQLTAHSSVARHL--LRDLPGVAATEETGVPLLLVDTAGCGLFELEEEDEQSK 509
Query 112 GTSYINRGEASIVERLILMLVRNGATADKIGVITPYIGQRNYLR-TLLQRNPFSDYIEIS 170
G N GE +V I LV G A I V++PY Q + LR +L+ R+P +EI
Sbjct 510 G----NPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVHRHP---ELEIK 562
Query 171 SVDSFQGREKDYIIFSCVRSNPNRSIG 197
SVD FQGREK+ +I S VRSN +G
Sbjct 563 SVDGFQGREKEAVILSFVRSNRKGEVG 589
> ath:AT1G65780 tRNA-splicing endonuclease positive effector-related
Length=1065
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 6/197 (3%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
G H++++GD+ Q+ +V SQ A AG LF RL LL + L++QYRMH +S FP
Sbjct 588 GLRHLILVGDERQLPAMVESQIALEAGFGRSLFERLALLGHKKYMLNIQYRMHCSISSFP 647
Query 61 SKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFYHSSTKEELSTTGTSYINRGE 120
+K YG + + + ++R YT P + S + Y E
Sbjct 648 NKELYGKKILDAPTVRQRNYTKQYLPGEMYGPYSFINIAYGREEYGEGEGRSLKNNVEVV 707
Query 121 ASIVERLILMLV-RNGATADKIGVITPYIGQRNYLRTLLQRNPFSDY-----IEISSVDS 174
L+ V T +GVI+PY Q ++ +Q D + I +VD
Sbjct 708 VVAAIIANLLQVSEKTKTRINVGVISPYKAQVIAIQEKIQETSIGDAGGLFSLRIRTVDG 767
Query 175 FQGREKDYIIFSCVRSN 191
FQG E+D II S VRSN
Sbjct 768 FQGGEEDIIIVSTVRSN 784
> mmu:327762 Dna2, Dna2l, E130315B21Rik, KIAA0083; DNA replication
helicase 2 homolog (yeast) (EC:3.6.4.12); K10742 DNA replication
ATP-dependent helicase Dna2 [EC:3.6.4.12]
Length=1062
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 108/213 (50%), Gaps = 24/213 (11%)
Query 6 VVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFPSKTFY 65
V++GD Q+ P+V++++A A G+S LF RL + V +L+VQYRM+ + +K Y
Sbjct 784 VLVGDHQQLPPLVVNREARALGMSESLFKRLERNESAVVQLTVQYRMNRKIMSLSNKLTY 843
Query 66 GGFLQ-------NGVSA----KERVYTL------NPKPSLS-FPSPSLPSFFYHSS---T 104
G L+ N V A K+ +L + P L+ P P F ++
Sbjct 844 AGKLECGSDRVANAVLALPNLKDARLSLQLYADYSDSPWLAGVLEPDNPVCFLNTDKVPA 903
Query 105 KEELSTTGTSYINRGEASIVERLILMLVRNGATADKIGVITPYIGQRNYLRTLLQRNPFS 164
E++ G S N EA ++ L ++ G + IGVI PY Q + LL R+
Sbjct 904 PEQVENGGVS--NVTEARLIVFLTSTFIKAGCSPSDIGVIAPYRQQLRIISDLLARSSVG 961
Query 165 DYIEISSVDSFQGREKDYIIFSCVRSNPNRSIG 197
+E+++VD +QGR+K I+ S VRSN + ++G
Sbjct 962 -MVEVNTVDKYQGRDKSLILVSFVRSNEDGTLG 993
> cpv:cgd1_830 sen1p/ NAM7 like superfamily I RNA helicase
Length=994
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 106/213 (49%), Gaps = 29/213 (13%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
G ++++GD Q+ V+S++A I LF RL + V LSVQYRMHP +S FP
Sbjct 581 GCKRLILVGDPKQLPATVLSRRAIERKYDISLFQRLQMSGQQVVMLSVQYRMHPQISAFP 640
Query 61 SKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFYHSSTKEELSTTGTSYINRGE 120
SK FY G L + K+ + T P + P F+ +++EE G S N E
Sbjct 641 SKHFYDGELHD---YKDILKTRAPVVTWQDIPIFKPFTFFSVNSEEE---QGKSISNLLE 694
Query 121 AS----IVERLILMLVRNGATA--------------DKIGVITPYIGQ----RNYLRTLL 158
A I+E L L+L + ++I VI+PY Q R ++
Sbjct 695 ADFVCQILELLGLILYEHQKKLTENTDLGEPSKRWYERIAVISPYNEQVKIIRKKIKEKF 754
Query 159 QRNPFSDY-IEISSVDSFQGREKDYIIFSCVRS 190
+P + I++S+VD FQG+EKD+IIFS VRS
Sbjct 755 GLSPETICPIDVSTVDGFQGQEKDFIIFSVVRS 787
> dre:768184 zgc:154086; K13983 putative helicase MOV10L1 [EC:3.6.4.13]
Length=1106
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 97/210 (46%), Gaps = 30/210 (14%)
Query 2 ASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLL--------------LLNAPVFRLS 47
+ +V+ GD Q+GPVV S+ A+ GL + L RL+ LL V +L
Sbjct 835 SGQIVLAGDPKQLGPVVKSRLASVFGLGVSLLERLMGNSLYACGERGFNPLL---VTKLL 891
Query 48 VQYRMHPGLSDFPSKTFYGGFL--QNGVSAKERVYTLNPKPSLSFPSPSLPSFFYHSSTK 105
YR H L D PS+ FY G L + +A + + N P+ FP +H
Sbjct 892 YNYRSHEALLDLPSRLFYAGELCVRAQRAAVDSLCHWNKLPTRGFP------LIFHGVRG 945
Query 106 EELST-TGTSYINRGEASIVERLILMLVR---NGATADKIGVITPYIGQRNYLRTLLQRN 161
E+ S+ N EA V L + N +A IGVI PY Q +R LLQR
Sbjct 946 SEMREGCNPSWFNPAEAVQVMMYCCQLAKRLYNPISAADIGVIAPYRKQVEKIRVLLQRV 1005
Query 162 PFSDYIEISSVDSFQGREKDYIIFSCVRSN 191
+ +++ SV+ FQG+E +I S VRSN
Sbjct 1006 GLGE-VKVGSVEEFQGQEFLIMILSTVRSN 1034
> mmu:83456 Mov10l1, CHAMP, Csm; Moloney leukemia virus 10-like
1 (EC:3.6.4.13); K13983 putative helicase MOV10L1 [EC:3.6.4.13]
Length=1187
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 100/215 (46%), Gaps = 32/215 (14%)
Query 4 HVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLL-----LLNAPVF------------RL 46
+V+ GD MQ+GPV+ S+ A A GL++ + RL+ L + F +L
Sbjct 911 QIVLAGDPMQLGPVIKSRLAMAYGLNVSMLERLMSRPAYLRDENAFGACGAYNPLLVTKL 970
Query 47 SVQYRMHPGLSDFPSKTFYGGFLQNGVSAKERVYTLNPKPSL----SFPSPSLPSFFYHS 102
YR H L PS+ FY L+ V A +V T SL P P F+
Sbjct 971 VKNYRSHSALLALPSRLFYHRELE--VCADPKVVT-----SLLGWEKLPRKGFPLIFHGV 1023
Query 103 STKEELSTTGTSYINRGEASIVERLILMLVR---NGATADKIGVITPYIGQRNYLRTLLQ 159
E S+ + EA V R +L R + ++ IGVITPY Q ++ LL+
Sbjct 1024 RGNEAREGRSPSWFSPAEAVQVMRYCCLLARSVSSQVSSKDIGVITPYRKQVEKIKILLR 1083
Query 160 RNPFSDYIEISSVDSFQGREKDYIIFSCVRSNPNR 194
+D I++ SV+ FQG+E I+ S VRSN +R
Sbjct 1084 NVDLTD-IKVGSVEEFQGQEYLVIVISTVRSNEDR 1117
> bbo:BBOV_III008170 17.m07714; hypothetical protein
Length=943
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 101/219 (46%), Gaps = 35/219 (15%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFP 60
G V+++GD Q+ V S A + LF RL + PV L +QYRM P +S FP
Sbjct 573 GCRRVILVGDPCQLSATVCSNVAVSLKYDRSLFQRLQMCGYPVNLLDIQYRMDPLISRFP 632
Query 61 SKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFYHSSTKEELSTTGTSYINRGE 120
S FY L++ S ER FP P+ FY + + TSY+N E
Sbjct 633 SMYFYRNQLKDAPSVYER----QKSDWREFPLLR-PAVFYAIDSLQ--MKNETSYMNEME 685
Query 121 ASIVERLILMLVRNGAT---------ADKIGVITPYIGQRNYLR-TLLQRNP-------F 163
A +V +L+ +++ A ++ VIT Y Q L+ T+ +R+P
Sbjct 686 AELVCQLLELILDVLAAEPGFELSSLEQRVAVITTYSAQVALLKETIARRHPQLVVPSVD 745
Query 164 SDYI-----------EISSVDSFQGREKDYIIFSCVRSN 191
D I ++SSVD FQG EK+ +IFS VR++
Sbjct 746 KDSILPGISYPKLLFDVSSVDGFQGMEKEIVIFSAVRTS 784
> tpv:TP03_0654 hypothetical protein
Length=1158
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 90/206 (43%), Gaps = 29/206 (14%)
Query 1 GASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLN-APVFRLSVQYRMHPGLSDF 59
G +V+IGD Q+ P +IS A GL L RL+ APV L+VQ RMHP + +F
Sbjct 891 GCKSLVLIGDHKQLRPTIISNHALKLGLDKSLLERLIEEEVAPVHMLNVQRRMHPSIIEF 950
Query 60 PSKTFYGGFL--QNGVSAKERVYTLNPK--PSLSFPSPSLPSFFYHS----STKEELSTT 111
P+ FY + Q V+ V +N +P F ST+ EL
Sbjct 951 PNMHFYSNKIHSQGNVNCVYNVGEVNRSRIRGFKWPVECYNVVFIDVSTSPSTQFELP-Q 1009
Query 112 GTSYINRGEASIVERLILMLVRNGATADKIGVITPYIGQRNYLRTLLQRNPFSDYIEISS 171
G S N E V L+ +R + G+ S IE+ S
Sbjct 1010 GKSKSNLIEVKCVMALLNSFLRANDVKEHQGL-------------------ESGMIEVDS 1050
Query 172 VDSFQGREKDYIIFSCVRSNPNRSIG 197
VD FQGREKD IIF+ VRSN + IG
Sbjct 1051 VDGFQGREKDLIIFTAVRSNLVKDIG 1076
> ath:AT1G08840 emb2411 (embryo defective 2411); ATP binding /
ATP-dependent DNA helicase/ DNA binding; K10742 DNA replication
ATP-dependent helicase Dna2 [EC:3.6.4.12]
Length=1296
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 96/198 (48%), Gaps = 14/198 (7%)
Query 2 ASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFR-LSVQYRMHPGLSDFP 60
AS V++GD Q+ P+V S +A G+ I LF RL + L QYRM G+ +
Sbjct 1037 ASTFVLVGDHYQLPPLVQSTEARENGMGISLFRRLSEAHPQAISVLQNQYRMCRGIMELS 1096
Query 61 SKTFYGGFLQNGVSAKERVYTL------NPKPSLS-FPSPSLPSFFYHSSTKEELSTTGT 113
+ YG L G SA+ TL + P L P+ F ++
Sbjct 1097 NALIYGDRLCCG-SAEVADATLVLSTSSSTSPWLKKVLEPTRTVVFVNTDMLRAFEARDQ 1155
Query 114 SYINRG-EASIVERLILMLVRNGATADKIGVITPYIGQRNYLRTLLQRNPFSDYIEISSV 172
+ IN EASI+ ++ LV NG + IG+ITPY Q + ++ + P +EI ++
Sbjct 1156 NAINNPVEASIIAEIVEELVNNGVDSKDIGIITPYNSQASLIQHAIPTTP----VEIHTI 1211
Query 173 DSFQGREKDYIIFSCVRS 190
D +QGR+KD I+ S VRS
Sbjct 1212 DKYQGRDKDCILVSFVRS 1229
> hsa:23064 SETX, ALS4, AOA2, DKFZp781B151, FLJ12840, FLJ43459,
KIAA0625, SCAR1, bA479K20.2; senataxin (EC:3.6.1.-); K10706
senataxin [EC:3.6.4.-]
Length=2677
Score = 81.3 bits (199), Expect = 2e-15, Method: Composition-based stats.
Identities = 62/205 (30%), Positives = 96/205 (46%), Gaps = 31/205 (15%)
Query 5 VVVIGDQMQMGPVVISQQAAAAGLSIPL---FVRLLLLNA--------PVFRLSVQYRMH 53
++++GD Q+ P VIS +A G + F RLL N P+ +L+VQYRMH
Sbjct 2202 LILVGDPKQLPPTVISMKAQEYGYDQSMMARFCRLLEENVEHNMISRLPILQLTVQYRMH 2261
Query 54 PGLSDFPSKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFYHSSTKEELSTTGT 113
P + FPS Y L+ + S P P + E
Sbjct 2262 PDICLFPSNYVYNRNLKTNRQTE--------AIRCSSDWPFQPYLVFDVGDGSE-RRDND 2312
Query 114 SYINRGEASIVERLILMLV--RNGATADKIGVITPYIGQRNYLRTLLQRNPFSDY----- 166
SYIN E +V +I ++ R + IG+IT Y Q+ T++Q++ ++
Sbjct 2313 SYINVQEIKLVMEIIKLIKDKRKDVSFRNIGIITHYKAQK----TMIQKDLDKEFDRKGP 2368
Query 167 IEISSVDSFQGREKDYIIFSCVRSN 191
E+ +VD+FQGR+KD +I +CVR+N
Sbjct 2369 AEVDTVDAFQGRQKDCVIVTCVRAN 2393
> dre:556484 ighmbp2l, MGC110400, si:ch211-238n5.2, zgc:110400;
immunoglobulin mu binding protein 2, like
Length=997
Score = 81.3 bits (199), Expect = 2e-15, Method: Composition-based stats.
Identities = 63/201 (31%), Positives = 96/201 (47%), Gaps = 8/201 (3%)
Query 2 ASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLL--LLNAPVFRLSVQYRMHPGLSDF 59
A ++ GD Q+ P + SQ AA+ GLS+ L RL+ ++ V L+ QYRM+ + +
Sbjct 390 ARKCILAGDYKQLPPTIKSQSAASKGLSVSLMERLIKKYGDSVVRMLTTQYRMNSAIMQW 449
Query 60 PSKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFYHSS---TKEELSTTGTSYI 116
S+ Y G L S ++ + + +P ++ E +T S
Sbjct 450 ASEQMYQGKLIAHPSVEKHLLR-DLAGVADVEETRIPLLLVDTAGCGLNEMENTDEQSKG 508
Query 117 NRGEASIVERLILMLVRNGATADKIGVITPYIGQRNYLRTLLQRNPFSDYIEISSVDSFQ 176
N+GE IV I L G I +I PY Q + LR L +++ +EI SVD FQ
Sbjct 509 NQGEVDIVALHIKALTEAGVQVKDIAIIAPYNLQVDLLRQKLSHK-YAE-LEIKSVDGFQ 566
Query 177 GREKDYIIFSCVRSNPNRSIG 197
GREK+ ++ S VRSN +G
Sbjct 567 GREKEAVVLSLVRSNRKGEVG 587
> xla:378492 dna2, XDna2, dna2-A; DNA replication helicase 2 homolog
(EC:3.6.4.12); K10742 DNA replication ATP-dependent helicase
Dna2 [EC:3.6.4.12]
Length=1053
Score = 81.3 bits (199), Expect = 2e-15, Method: Composition-based stats.
Identities = 68/218 (31%), Positives = 100/218 (45%), Gaps = 27/218 (12%)
Query 2 ASHVVVIGDQMQMGPVVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFPS 61
A V++GD Q+ P+V S +A G+S LF RL V +L+VQYRM+ + +
Sbjct 780 ADRFVLVGDHQQLPPLVKSAEARELGMSESLFKRLERNQEAVVQLTVQYRMNSKIMALSN 839
Query 62 KTFYGGFLQ-------NGVSAKERVYTL-------NPKPSLSFP---SPSLPSFFYHSST 104
K Y G L+ N V + TL + S+ PS P F ++
Sbjct 840 KLVYEGRLECASDRVSNAVVQLPHIKTLLLELEFRESQESMWIKDVLEPSNPVCFLNTEK 899
Query 105 KEELSTTGTSYI-NRGEASIVERLILMLVRNGATADKIGVITPYIGQ----RNYLRTLLQ 159
L T I N EA +V L + ++ G IG+I PY Q NY +L
Sbjct 900 IPALETEEKGGISNWIEAKLVFHLTKLYLKAGCRPSDIGIIAPYRQQLKMISNYFNSL-- 957
Query 160 RNPFSDYIEISSVDSFQGREKDYIIFSCVRSNPNRSIG 197
+ +E+++VD +QGR+K II S VRSN + +G
Sbjct 958 ---SASAVEVNTVDKYQGRDKSVIIVSFVRSNIDGKLG 992
> cel:ZK1067.2 hypothetical protein
Length=2219
Score = 80.9 bits (198), Expect = 2e-15, Method: Composition-based stats.
Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 17/194 (8%)
Query 4 HVVVIGDQMQMGP-VVISQQAAAAGLSIPLFVRLLLLNAPVFRLSVQYRMHPGLSDFPSK 62
HVV+IGD Q+ P + + A GL I +F RL+ P +L Q+RM+ +SD K
Sbjct 1256 HVVMIGDHKQLRPNPAVHELGVAYGLRISMFERLVERGLPFSQLRQQHRMNLTISDKIVK 1315
Query 63 -TFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFYHSSTKEELSTTGTSYINRGEA 121
+FY + V+ E V P + + +L F+ S T E S S++N+ E
Sbjct 1316 LSFY-----DNVTDAENV---GLYPDVQGMATNL---FFWSHTSMEESPDEVSWLNKHEI 1364
Query 122 SIVERLILMLVRNGATADKIGVITPYIGQRNYL----RTLLQRNPFSDYIEISSVDSFQG 177
S+ L+ L++ T + I V+ Y Q+N + + P S+ I + +VDSFQG
Sbjct 1365 SMTVALVKHLLKQNYTTNDIVVLATYSAQKNLMYREYANVFGSTPDSNVIPVETVDSFQG 1424
Query 178 REKDYIIFSCVRSN 191
+E+ +I S VRS+
Sbjct 1425 KERKIVIVSLVRSH 1438
> mmu:269254 Setx, A130090N03, A930037J23Rik, AOA2, AW060766,
Als4, SCAR1, Sen1, mKIAA0625; senataxin (EC:3.6.1.-); K10706
senataxin [EC:3.6.4.-]
Length=2646
Score = 80.1 bits (196), Expect = 4e-15, Method: Composition-based stats.
Identities = 62/205 (30%), Positives = 96/205 (46%), Gaps = 31/205 (15%)
Query 5 VVVIGDQMQMGPVVISQQAAAAGLSIPL---FVRLLLLNA--------PVFRLSVQYRMH 53
++++GD Q+ P VIS +A G + F +LL N PV +L++QYRMH
Sbjct 2178 LILVGDPKQLPPTVISMKAQEYGYDQSMMARFCKLLEENVEQNMIGRLPVLQLTIQYRMH 2237
Query 54 PGLSDFPSKTFYGGFLQNGVSAKERVYTLNPKPSLSFPSPSLPSFFYHSSTKEELSTTGT 113
P + FPS Y L+ L S P P + E
Sbjct 2238 PDICLFPSNYVYNKNLKTN--------RLTESIRCSSEWPFQPYLVFDVGDGSE-RRDND 2288
Query 114 SYINRGEASIVERLILMLV--RNGATADKIGVITPYIGQRNYLRTLLQRNPFSDY----- 166
SYIN E +V +I ++ R + IG+IT Y Q+ T++Q++ ++
Sbjct 2289 SYINVQEIKLVMEIIKLIKEKRKDISFRNIGIITHYKAQK----TMIQKDLEKEFDKKGP 2344
Query 167 IEISSVDSFQGREKDYIIFSCVRSN 191
E+ +VD+FQGR+KD II +CVR++
Sbjct 2345 AEVDTVDAFQGRQKDCIIVTCVRAS 2369
Lambda K H
0.320 0.137 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 5802328440
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
Posted date: Sep 17, 2011 11:19 AM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40