bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_865 164,496 sequences; 82,071,388 total letters Query= Emax_2197_orf1 Length=113 Score E Sequences producing significant alignments: (Bits) Value tgo:TGME49_090640 DNA mismatch repair protein, putative (EC:3.... 106 2e-23 mmu:17688 Msh6, AU044881, AW550279, GTBP, Gtmbp; mutS homolog ... 94.4 9e-20 dre:260437 msh6, cb326, wu:fb36c12; mutS homolog 6 (E. coli); ... 92.8 3e-19 hsa:2956 MSH6, GTBP, HNPCC5, HSAP; mutS homolog 6 (E. coli); K... 88.6 4e-18 xla:734294 msh6, MGC85188; mutS homolog 6; K08737 DNA mismatch... 87.0 1e-17 cpv:cgd8_370 DNA repair protein ; K08737 DNA mismatch repair p... 85.1 4e-17 bbo:BBOV_I004430 19.m02191; DNA repair protein; K08737 DNA mis... 84.0 1e-16 pfa:PFE0270c DNA repair protein, putative; K08737 DNA mismatch... 82.8 3e-16 ath:AT3G24495 MSH7; MSH7 (MUTS HOMOLOG 7); ATP binding / damag... 80.5 1e-15 ath:AT4G25540 MSH3; MSH3 (Arabidopsis homolog of DNA mismatch ... 78.2 6e-15 cel:H26D21.2 msh-2; MSH (MutS Homolog) family member (msh-2); ... 78.2 7e-15 tpv:TP01_0185 DNA repair protein; K08737 DNA mismatch repair p... 76.3 2e-14 mmu:17686 Msh3, D13Em1, Rep-3, Rep3; mutS homolog 3 (E. coli);... 74.7 6e-14 pfa:PF14_0254 DNA mismatch repair protein Msh2p, putative; K08... 73.9 1e-13 pfa:MAL7P1.206 DNA mismatch repair protein, putative 72.0 4e-13 sce:YCR092C MSH3; Mismatch repair protein, forms dimers with M... 72.0 4e-13 hsa:4437 MSH3, DUP, MGC163306, MGC163308, MRP1; mutS homolog 3... 72.0 4e-13 tgo:TGME49_061000 DNA mismatch repair protein, putative ; K087... 67.8 9e-12 dre:565400 novel protein similar to vertebrate mutS homolog 3 ... 67.0 2e-11 sce:YFL003C MSH4; Msh4p; K08740 DNA mismatch repair protein MSH4 66.6 2e-11 cel:Y47G6A.11 msh-6; MSH (MutS Homolog) family member (msh-6);... 66.2 2e-11 ath:AT4G17380 MSH4; MSH4 (MUTS HOMOLOG 4); ATP binding / damag... 66.2 2e-11 ath:AT3G18524 MSH2; MSH2 (MUTS HOMOLOG 2); ATP binding / damag... 65.5 5e-11 eco:b2733 mutS, ant, ECK2728, fdv, JW2703, plm; methyl-directe... 64.7 7e-11 sce:YOL090W MSH2, PMS5; Msh2p; K08735 DNA mismatch repair prot... 63.5 1e-10 mmu:55993 Msh4, 4930485C04Rik, AV144863, mMsh4; mutS homolog 4... 62.4 4e-10 tpv:TP01_0456 DNA mismatch repair protein MSH2; K08735 DNA mis... 62.0 4e-10 sce:YDL154W MSH5; Msh5p; K08741 DNA mismatch repair protein MSH5 62.0 4e-10 dre:406845 msh2, wu:fc06b02, wu:fc13e09, zgc:55333; mutS homol... 62.0 4e-10 hsa:4438 MSH4; mutS homolog 4 (E. coli); K08740 DNA mismatch r... 62.0 5e-10 ath:AT4G02070 MSH6; MSH6 (MUTS HOMOLOG 6); damaged DNA binding... 61.2 8e-10 cpv:cgd8_3950 MutS like ABC ATpase involved in DNA repair ; K0... 60.8 9e-10 hsa:4436 MSH2, COCA1, FCC1, HNPCC, HNPCC1, LCFS2; mutS homolog... 60.5 1e-09 ath:AT3G20475 MSH5; MSH5 (MUTS-HOMOLOGUE 5); ATP binding / dam... 60.1 2e-09 mmu:17685 Msh2, AI788990; mutS homolog 2 (E. coli); K08735 DNA... 58.5 5e-09 mmu:100046843 DNA mismatch repair protein Msh3-like 57.8 8e-09 hsa:4439 MSH5, DKFZp434C1615, G7, MGC2939, MUTSH5, NG23; mutS ... 57.8 9e-09 mmu:17687 Msh5, G7, Mut5; mutS homolog 5 (E. coli); K08741 DNA... 57.4 1e-08 sce:YHR120W MSH1; DNA-binding protein of the mitochondria invo... 57.0 1e-08 bbo:BBOV_I003810 19.m02277; DNA mismatch repair enzyme; K08735... 56.6 2e-08 dre:559917 mutS homolog 4-like; K08740 DNA mismatch repair pro... 53.9 1e-07 cel:ZK1127.11 him-14; High Incidence of Males (increased X chr... 51.2 8e-07 sce:YDR097C MSH6, PMS3; Msh6p; K08737 DNA mismatch repair prot... 50.8 1e-06 dre:570030 msh5; mutS homolog 5 (E. coli); K08741 DNA mismatch... 48.5 6e-06 cel:F09E8.3 msh-5; MSH (MutS Homolog) family member (msh-5); K... 45.1 6e-05 ath:AT5G54090 DNA mismatch repair MutS family protein 42.7 3e-04 ath:AT3G24320 MSH1; MSH1 (MUTL PROTEIN HOMOLOG 1); ATP binding... 36.2 0.028 tgo:TGME49_018840 mismatch repair protein, putative (EC:2.7.1.... 32.0 0.48 cpv:cgd7_2660 RAD24/Rf-C activator 1 AAA+ ATpase ; K06662 cell... 31.2 0.75 pfa:PF14_0051 DNA mismatch repair protein, putative 31.2 0.82 > tgo:TGME49_090640 DNA mismatch repair protein, putative (EC:3.2.1.3); K08737 DNA mismatch repair protein MSH6 Length=1607 Score = 106 bits (265), Expect = 2e-23, Method: Composition-based stats. Identities = 54/97 (55%), Positives = 64/97 (65%), Gaps = 13/97 (13%) Query 17 MARPKLLPPSEDEEPVLILRNARHPIAEKLTENFVPNDVMLNVPADYSSSSNSSSSSSSS 76 M RP ++ ED P+L L+N RHP+AE L +NFVPNDV LN S Sbjct 1288 MCRPTIVEAREDAPPILALKNCRHPVAETLMDNFVPNDVYLNCGPHESK----------- 1336 Query 77 KTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 RTLLITGPNMGGKSTLLRQ ALCV++AQ+G +VPA Sbjct 1337 --RTLLITGPNMGGKSTLLRQAALCVVMAQVGCFVPA 1371 > mmu:17688 Msh6, AU044881, AW550279, GTBP, Gtmbp; mutS homolog 6 (E. coli); K08737 DNA mismatch repair protein MSH6 Length=1358 Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 46/115 (40%), Positives = 67/115 (58%), Gaps = 12/115 (10%) Query 1 VLQSLATFAKTHPGPGMARPKLLPPSEDEEPVLILRNARHPIAEK--LTENFVPNDVMLN 58 VL LA +++ GP M RP+++ P ED P L + +RHP K ++F+PND+++ Sbjct 1056 VLLCLANYSQGGDGP-MCRPEIVLPGEDTHPFLEFKGSRHPCITKTFFGDDFIPNDILIG 1114 Query 59 VPADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 + + K +L+TGPNMGGKSTL+RQ L ++AQLG YVPA Sbjct 1115 CEEE---------AEEHGKAYCVLVTGPNMGGKSTLIRQAGLLAVMAQLGCYVPA 1160 > dre:260437 msh6, cb326, wu:fb36c12; mutS homolog 6 (E. coli); K08737 DNA mismatch repair protein MSH6 Length=1369 Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 49/117 (41%), Positives = 71/117 (60%), Gaps = 9/117 (7%) Query 1 VLQSLATFAKTHPGPGMARPKLLPPSEDE--EPVLILRNARHPIAEK--LTENFVPNDVM 56 VL S+ ++++ G MARP++ P + P L LR +RHP K ++F+PND+ Sbjct 1060 VLLSMCRYSQSADG-SMARPEMALPGDGSYSAPFLDLRGSRHPCVTKTFFGDDFIPNDIF 1118 Query 57 LNVPADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 + P D + + + + + +L+TGPNMGGKSTL+RQ L VILAQLG YVPA Sbjct 1119 IGCPGDEEEAQDDTKALAP----CVLVTGPNMGGKSTLMRQCGLVVILAQLGCYVPA 1171 > hsa:2956 MSH6, GTBP, HNPCC5, HSAP; mutS homolog 6 (E. coli); K08737 DNA mismatch repair protein MSH6 Length=1360 Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 67/115 (58%), Gaps = 13/115 (11%) Query 1 VLQSLATFAKTHPGPGMARPKLLPPSEDEEPVLILRNARHPIAEK--LTENFVPNDVMLN 58 VL LA +++ GP M RP +L P ED P L L+ +RHP K ++F+PND+++ Sbjct 1059 VLLCLANYSRGGDGP-MCRPVILLP-EDTPPFLELKGSRHPCITKTFFGDDFIPNDILIG 1116 Query 59 VPADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 + + K +L+TGPNMGGKSTL+RQ L ++AQ+G YVPA Sbjct 1117 CEEE---------EQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPA 1162 > xla:734294 msh6, MGC85188; mutS homolog 6; K08737 DNA mismatch repair protein MSH6 Length=1340 Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 11/115 (9%) Query 1 VLQSLATFAKTHPGPGMARPKLLPPSEDEEPVLILRNARHPIAEK--LTENFVPNDVMLN 58 VL SL+ +++ GP + RP+++ E+ P L L+ +RHP K ++F+PND+++ Sbjct 1039 VLISLSQYSQGGDGP-VCRPEIVL-QENGSPFLELKGSRHPCITKTFFGDDFIPNDILVG 1096 Query 59 VPADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 + S S + +L+TGPNMGGKSTLLRQ L V++AQLG YVPA Sbjct 1097 CKEE-------DSDDGSDEAHCVLVTGPNMGGKSTLLRQAGLQVVMAQLGCYVPA 1144 > cpv:cgd8_370 DNA repair protein ; K08737 DNA mismatch repair protein MSH6 Length=1242 Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 51/115 (44%), Positives = 67/115 (58%), Gaps = 17/115 (14%) Query 1 VLQSLATFA-KTHPGPGMARPKLLPPSE-DEEPVLILRNARHPIAEKLTENFVPNDVMLN 58 VL SLA + T GP +P L E + P+L L+ +RHP+ KL N++PND++LN Sbjct 939 VLSSLALVSLDTSDGP-FCKPVFLSKEETNGLPMLELKESRHPVVAKLKTNYIPNDILLN 997 Query 59 VPADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 SS L+TGPNMGGKST+LRQT + VI+AQ+G YVPA Sbjct 998 --------------GGSSPAPCSLVTGPNMGGKSTILRQTCISVIMAQIGCYVPA 1038 > bbo:BBOV_I004430 19.m02191; DNA repair protein; K08737 DNA mismatch repair protein MSH6 Length=1313 Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/114 (44%), Positives = 66/114 (57%), Gaps = 18/114 (15%) Query 1 VLQSLATFAKTHPGPGMARPKLLPPSEDEEPVLILRNARHPIAEKLT-ENFVPNDVMLNV 59 L SLA AK P + R +++ EP +++R+A HPI ++ E FVPNDV L Sbjct 1023 CLCSLAAVAKNSVLP-LTRAEVIDRGT-AEPFVLIRDAVHPIVSQIDPEGFVPNDVQLG- 1079 Query 60 PADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 DY +L+TGPNMGGKSTLLRQ ALCVI+AQ+GS+VP Sbjct 1080 HGDYQP--------------LILLTGPNMGGKSTLLRQVALCVIMAQMGSFVPG 1119 > pfa:PFE0270c DNA repair protein, putative; K08737 DNA mismatch repair protein MSH6 Length=1350 Score = 82.8 bits (203), Expect = 3e-16, Method: Composition-based stats. Identities = 48/115 (41%), Positives = 62/115 (53%), Gaps = 19/115 (16%) Query 2 LQSLATFAKTHPGPGMARPKLLP----PSEDEEPVLILRNARHPIAEKLTENFVPNDVML 57 LQS A P + RP L P E++ P LIL + HP+ L NF+ N++ + Sbjct 1053 LQSFAYVVLNTAFP-LTRPILHPMDSKQGEEKTPFLILEDNIHPVVAMLMPNFISNNIYM 1111 Query 58 NVPADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVP 112 K TLL+TGPNMGGKSTLLRQTA+ VILAQ+G++VP Sbjct 1112 --------------GCDKEKQSTLLLTGPNMGGKSTLLRQTAISVILAQIGAFVP 1152 > ath:AT3G24495 MSH7; MSH7 (MUTS HOMOLOG 7); ATP binding / damaged DNA binding / mismatched DNA binding Length=1109 Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/121 (43%), Positives = 64/121 (52%), Gaps = 18/121 (14%) Query 1 VLQSLATFAKTHPGPGMARPKLLPPSEDEE-------PVLILRNARHPIAEKLTENF-VP 52 VL+S A A G MARP + P SE + P+L ++ HP A VP Sbjct 771 VLRSFAIAASLSAGS-MARPVIFPESEATDQNQKTKGPILKIQGLWHPFAVAADGQLPVP 829 Query 53 NDVMLNVPADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVP 112 ND++L + SS S R+LL+TGPNMGGKSTLLR T L VI AQLG YVP Sbjct 830 NDILLG---------EARRSSGSIHPRSLLLTGPNMGGKSTLLRATCLAVIFAQLGCYVP 880 Query 113 A 113 Sbjct 881 C 881 > ath:AT4G25540 MSH3; MSH3 (Arabidopsis homolog of DNA mismatch repair protein MSH3); damaged DNA binding / mismatched DNA binding / protein binding; K08736 DNA mismatch repair protein MSH3 Length=1081 Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 46/114 (40%), Positives = 65/114 (57%), Gaps = 24/114 (21%) Query 2 LQSLATFAKTHPGPGMARPKLLPPSEDEEPVLI-LRNARHPIAEK-LTENFVPNDVMLNV 59 L SL+T ++ RP+ + +D EPV I +++ RHP+ E L +NFVPND +L+ Sbjct 754 LHSLSTLSRN---KNYVRPEFV---DDCEPVEINIQSGRHPVLETILQDNFVPNDTILHA 807 Query 60 PADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 +Y +ITGPNMGGKS +RQ AL I+AQ+GS+VPA Sbjct 808 EGEYCQ----------------IITGPNMGGKSCYIRQVALISIMAQVGSFVPA 845 > cel:H26D21.2 msh-2; MSH (MutS Homolog) family member (msh-2); K08735 DNA mismatch repair protein MSH2 Length=849 Score = 78.2 bits (191), Expect = 7e-15, Method: Composition-based stats. Identities = 48/113 (42%), Positives = 62/113 (54%), Gaps = 23/113 (20%) Query 1 VLQSLATFAKTHPGPGMARPKLLPPSEDEEPVLILRNARHPIAEKLTEN-FVPNDVMLNV 59 V SL+TFA T G RP LLP L L+ RHP+ E +E F+PNDV+L+ Sbjct 576 VFVSLSTFAATSSGI-YTRPNLLPLGSKR---LELKQCRHPVIEGNSEKPFIPNDVVLD- 630 Query 60 PADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVP 112 K R +++TG NMGGKST LR AL ++LAQ+GS+VP Sbjct 631 -----------------KCRLIILTGANMGGKSTYLRSAALSILLAQIGSFVP 666 > tpv:TP01_0185 DNA repair protein; K08737 DNA mismatch repair protein MSH6 Length=1160 Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/110 (44%), Positives = 63/110 (57%), Gaps = 19/110 (17%) Query 2 LQSLATFAKTHPGPGMARPKLLPPSEDEEPVLILRNARHPIAEKLTENFVPNDVMLNVPA 61 L SLAT AK P P M RPKL P S++ +L ++++ +PI FVPN V N+ Sbjct 864 LTSLATVAKNSPFP-MCRPKLHPKSQN---ILRVKDSVYPIFSISGNKFVPNSV--NIGE 917 Query 62 DYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYV 111 + L+ITGPNMGGKSTLLRQ AL VI+ Q+GS+V Sbjct 918 GFDGP-------------ILIITGPNMGGKSTLLRQIALTVIMGQIGSFV 954 > mmu:17686 Msh3, D13Em1, Rep-3, Rep3; mutS homolog 3 (E. coli); K08736 DNA mismatch repair protein MSH3 Length=1095 Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 24/115 (20%) Query 2 LQSLATFAKTHPGPGMARPKLLPPSEDEEPVLILRNARHPIAEKL---TENFVPNDVMLN 58 + + + AK RP L EE +I++N RHP+ + L + FVPN Sbjct 789 VDCIFSLAKVAKQGNYCRPTL-----QEEKKIIIKNGRHPMIDVLLGEQDQFVPN----- 838 Query 59 VPADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 S+S S R ++ITGPNMGGKS+ ++Q AL I+AQ+GSYVPA Sbjct 839 -----------STSLSQDSERVMIITGPNMGGKSSYIKQVALVTIMAQIGSYVPA 882 > pfa:PF14_0254 DNA mismatch repair protein Msh2p, putative; K08735 DNA mismatch repair protein MSH2 Length=811 Score = 73.9 bits (180), Expect = 1e-13, Method: Composition-based stats. Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 23/114 (20%) Query 1 VLQSLATFAKTHPGPGMARPKLLPPSEDEEPVLILRNARHPIAEKL--TENFVPNDVMLN 58 VL S + P P RP ++ E+ +I+R +RHP+ E NF+PND+ +N Sbjct 495 VLISFSVVCHNSPFP-YVRPVIVDHGEN----VIMRKSRHPLLELQYNLNNFIPNDIHMN 549 Query 59 VPADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVP 112 +R +++TGPNMGGKST +RQTA+ ILAQ+G +VP Sbjct 550 ----------------KKNSRLIIVTGPNMGGKSTYIRQTAIICILAQIGMFVP 587 > pfa:MAL7P1.206 DNA mismatch repair protein, putative Length=873 Score = 72.0 bits (175), Expect = 4e-13, Method: Composition-based stats. Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 19/92 (20%) Query 24 PPSEDEEPVLILRNARHPIAEK---LTENFVPNDVMLNVPADYSSSSNSSSSSSSSKTRT 80 P E+ +L ++N+RHP+ E L NF+PNDV +N TR Sbjct 575 PEIEENGHILHMKNSRHPLVESNLLLINNFIPNDVYMN----------------KDITRL 618 Query 81 LLITGPNMGGKSTLLRQTALCVILAQLGSYVP 112 +ITGPNMGGKST +RQ AL ++A +G +VP Sbjct 619 NIITGPNMGGKSTYIRQIALICVMAHIGCFVP 650 > sce:YCR092C MSH3; Mismatch repair protein, forms dimers with Msh2p that mediate repair of insertion or deletion mutations and removal of nonhomologous DNA ends, contains a PCNA (Pol30p) binding motif required for genome stability; K08736 DNA mismatch repair protein MSH3 Length=1018 Score = 72.0 bits (175), Expect = 4e-13, Method: Composition-based stats. Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 16/90 (17%) Query 24 PPSEDEEPVLILRNARHPIAEKLTENFVPNDVMLNVPADYSSSSNSSSSSSSSKTRTLLI 83 P + + +I +NAR+PI E L ++VPND+M+ S + +I Sbjct 746 PTFVNGQQAIIAKNARNPIIESLDVHYVPNDIMM----------------SPENGKINII 789 Query 84 TGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 TGPNMGGKS+ +RQ AL I+AQ+GS+VPA Sbjct 790 TGPNMGGKSSYIRQVALLTIMAQIGSFVPA 819 > hsa:4437 MSH3, DUP, MGC163306, MGC163308, MRP1; mutS homolog 3 (E. coli); K08736 DNA mismatch repair protein MSH3 Length=1137 Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 19/92 (20%) Query 25 PSEDEEPVLILRNARHPIAEKL---TENFVPNDVMLNVPADYSSSSNSSSSSSSSKTRTL 81 P+ EE ++++N RHP+ + L + +VPN+ L S R + Sbjct 849 PTVQEERKIVIKNGRHPVIDVLLGEQDQYVPNNTDL----------------SEDSERVM 892 Query 82 LITGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 +ITGPNMGGKS+ ++Q AL I+AQ+GSYVPA Sbjct 893 IITGPNMGGKSSYIKQVALITIMAQIGSYVPA 924 > tgo:TGME49_061000 DNA mismatch repair protein, putative ; K08735 DNA mismatch repair protein MSH2 Length=936 Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 22/97 (22%) Query 19 RPKLLPPSEDEEPVLILRNARHPIAEKL--TENFVPNDVMLNVPADYSSSSNSSSSSSSS 76 RP+++ E + L+L+ +RHP+ E T +F+ NDV L+ Sbjct 574 RPQIV---EGDAGGLVLKASRHPLLEIQPGTSSFIANDVHLD-----------------R 613 Query 77 KTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 + R +ITGPNMGGKST +RQ AL V+LAQ+GS+VP Sbjct 614 ERRLAIITGPNMGGKSTYIRQVALTVLLAQIGSFVPC 650 > dre:565400 novel protein similar to vertebrate mutS homolog 3 (E. coli) (MSH3); K08736 DNA mismatch repair protein MSH3 Length=1083 Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 26/115 (22%) Query 2 LQSLATFAKTHPGPGMARPKLLPPSEDEEPVLILRNARHPIAEKL---TENFVPNDVMLN 58 L SLA AK + RP++L +E+ +++ +HP+ L + +VPND L Sbjct 789 LFSLAQVAKEN---NYCRPEVL----EEKSQILITAGKHPVITSLMGDQDQYVPNDTHLQ 841 Query 59 VPADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 R ++ITGPNMGGKS+ +RQ AL I+AQLGS+VPA Sbjct 842 ----------------GDGKRAMIITGPNMGGKSSYIRQVALVTIMAQLGSFVPA 880 > sce:YFL003C MSH4; Msh4p; K08740 DNA mismatch repair protein MSH4 Length=878 Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 16/81 (19%) Query 33 LILRNARHPIAEKLTENFVPNDVMLNVPADYSSSSNSSSSSSSSKTRTLLITGPNMGGKS 92 L++R++RHP+ EK+ +NFVPN + SS+ +SSS +ITG NM GKS Sbjct 598 LLIRDSRHPLLEKVLKNFVPNTI--------SSTKHSSSLQ--------IITGCNMSGKS 641 Query 93 TLLRQTALCVILAQLGSYVPA 113 L+Q AL I+AQ+GS +PA Sbjct 642 VYLKQVALICIMAQMGSGIPA 662 > cel:Y47G6A.11 msh-6; MSH (MutS Homolog) family member (msh-6); K08737 DNA mismatch repair protein MSH6 Length=1186 Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 62/113 (54%), Gaps = 12/113 (10%) Query 1 VLQSLATFAKTHPGPGMARPKLLPPSEDEEPVLILRNARHPIAEKLTENFVPNDVMLNVP 60 VL SLA FAK+ P M P+ + D P LI+ HP + N V Sbjct 890 VLTSLALFAKSSPFE-MCMPEFDFNATD--PYLIVDKGVHPCLALQSRNEVTQ------- 939 Query 61 ADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 +S +S++ +S+ +L+TGPNMGGKSTL+RQTA+ ILA +GS VPA Sbjct 940 --TTSFIANSTTMGASEAAVMLLTGPNMGGKSTLMRQTAVLAILAHIGSMVPA 990 > ath:AT4G17380 MSH4; MSH4 (MUTS HOMOLOG 4); ATP binding / damaged DNA binding / mismatched DNA binding; K08740 DNA mismatch repair protein MSH4 Length=792 Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/113 (37%), Positives = 55/113 (48%), Gaps = 22/113 (19%) Query 1 VLQSLATFAKTHPGPGMARPKLLPPSEDEEPVLILRNARHPIAEKLTENFVPNDVMLNVP 60 ++ S A T P +RP+L D P L + RHPI E + +FV N + + Sbjct 491 IVNSFAHTISTKPVDRYSRPEL----TDSGP-LAIDAGRHPILESIHNDFVSNSIFM--- 542 Query 61 ADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 S T L++ GPNM GKST L+Q L VILAQ+G YVPA Sbjct 543 --------------SEATNMLVVMGPNMSGKSTYLQQVCLVVILAQIGCYVPA 581 > ath:AT3G18524 MSH2; MSH2 (MUTS HOMOLOG 2); ATP binding / damaged DNA binding / mismatched DNA binding / protein binding; K08735 DNA mismatch repair protein MSH2 Length=937 Score = 65.5 bits (158), Expect = 5e-11, Method: Composition-based stats. Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 21/113 (18%) Query 1 VLQSLATFAKTHPGPGMARPKLLPPSEDEEPVLILRNARHPIAEKLT-ENFVPNDVMLNV 59 VL S A A + P P RP++ + + ++L +RHP E NF+PND L Sbjct 601 VLLSFADLAASCPTP-YCRPEI---TSSDAGDIVLEGSRHPCVEAQDWVNFIPNDCRL-- 654 Query 60 PADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVP 112 K+ ++TGPNMGGKST +RQ + V++AQ+GS+VP Sbjct 655 --------------MRGKSWFQIVTGPNMGGKSTFIRQVGVIVLMAQVGSFVP 693 > eco:b2733 mutS, ant, ECK2728, fdv, JW2703, plm; methyl-directed mismatch repair protein; K03555 DNA mismatch repair protein MutS Length=853 Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 18/90 (20%) Query 25 PSEDEEPVLILRNARHPIAEK-LTENFVPNDVMLNVPADYSSSSNSSSSSSSSKTRTLLI 83 P+ ++P + + RHP+ E+ L E F+ N + L S + R L+I Sbjct 570 PTFIDKPGIRITEGRHPVVEQVLNEPFIANPLNL-----------------SPQRRMLII 612 Query 84 TGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 TGPNMGGKST +RQTAL ++A +GSYVPA Sbjct 613 TGPNMGGKSTYMRQTALIALMAYIGSYVPA 642 > sce:YOL090W MSH2, PMS5; Msh2p; K08735 DNA mismatch repair protein MSH2 Length=964 Score = 63.5 bits (153), Expect = 1e-10, Method: Composition-based stats. Identities = 44/115 (38%), Positives = 61/115 (53%), Gaps = 23/115 (20%) Query 2 LQSLATFAKTH---PGPGMARPKLLPPSEDEEPVLILRNARHPIAEKLTE-NFVPNDVML 57 L +A+FA T P P + RPKL P + LI ++RHP+ E + +F+ NDV L Sbjct 620 LDVIASFAHTSSYAPIPYI-RPKLHPMDSERRTHLI--SSRHPVLEMQDDISFISNDVTL 676 Query 58 NVPADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVP 112 S K L+ITGPNMGGKST +RQ + ++AQ+G +VP Sbjct 677 ----------------ESGKGDFLIITGPNMGGKSTYIRQVGVISLMAQIGCFVP 715 > mmu:55993 Msh4, 4930485C04Rik, AV144863, mMsh4; mutS homolog 4 (E. coli); K08740 DNA mismatch repair protein MSH4 Length=958 Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/114 (36%), Positives = 56/114 (49%), Gaps = 25/114 (21%) Query 1 VLQSLATFAKTHPGPGMARPKLLPPSEDEEPVLILRNARHPIAEKLT-ENFVPNDVMLNV 59 +L L +FA RP+ L ++ HPI EK++ E V N+ + Sbjct 641 MLDMLLSFAHACTLSDYVRPEF-------TDTLAIKQGWHPILEKISAEKPVANNTYI-- 691 Query 60 PADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 + SN L+ITGPNM GKST L+Q ALC I+AQ+GSYVPA Sbjct 692 ----TEGSN-----------VLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPA 730 > tpv:TP01_0456 DNA mismatch repair protein MSH2; K08735 DNA mismatch repair protein MSH2 Length=790 Score = 62.0 bits (149), Expect = 4e-10, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 19/91 (20%) Query 25 PSEDEEPVLI-LRNARHPIAEKL--TENFVPNDVMLNVPADYSSSSNSSSSSSSSKTRTL 81 P+ DE + L ARHP+ E + + +F+PND+ + ++R Sbjct 524 PTIDETGKTVNLTEARHPLVEYVLSSNSFIPNDLYM----------------ERDRSRVQ 567 Query 82 LITGPNMGGKSTLLRQTALCVILAQLGSYVP 112 +ITGPNMGGKST ++Q L IL Q+GS+VP Sbjct 568 IITGPNMGGKSTYIKQIGLIAILNQIGSFVP 598 > sce:YDL154W MSH5; Msh5p; K08741 DNA mismatch repair protein MSH5 Length=901 Score = 62.0 bits (149), Expect = 4e-10, Method: Composition-based stats. Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 9/106 (8%) Query 8 FAKTHPGPGMARPKLLPPSEDEEPVLILRNARHPIAEKLTENFVPNDVMLNVPADYSSSS 67 FA+ A P+L+ ++E +L + N RH + E +N++PN M++ Sbjct 575 FAQVSAERNYAEPQLV----EDECILEIINGRHALYETFLDNYIPNSTMID-----GGLF 625 Query 68 NSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 + S +K R +++TG N GKS L Q L V LAQ+G +VPA Sbjct 626 SELSWCEQNKGRIIVVTGANASGKSVYLTQNGLIVYLAQIGCFVPA 671 > dre:406845 msh2, wu:fc06b02, wu:fc13e09, zgc:55333; mutS homolog 2 (E. coli); K08735 DNA mismatch repair protein MSH2 Length=936 Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 53/111 (47%), Gaps = 21/111 (18%) Query 4 SLATFAKTHPGPGMARPKLLPPSEDEEPVLILRNARHPIAEKLTE-NFVPNDVMLNVPAD 62 S A + P P RPK+L L+L+ ARHP E E F+PNDV Sbjct 607 SFAVVSHAAPVP-FIRPKILEKGSGR---LVLKAARHPCVEAQDEVAFIPNDVTF----- 657 Query 63 YSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 + +ITGP+MGGKST +RQ + V++AQ+G +VP Sbjct 658 -----------IRGEKMFHIITGPSMGGKSTYIRQVGVIVLMAQIGCFVPC 697 > hsa:4438 MSH4; mutS homolog 4 (E. coli); K08740 DNA mismatch repair protein MSH4 Length=936 Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 25/114 (21%) Query 1 VLQSLATFAKTHPGPGMARPKLLPPSEDEEPVLILRNARHPIAEKLT-ENFVPNDVMLNV 59 +L L +FA RP+ L ++ HPI EK++ E + N+ + Sbjct 619 MLDMLLSFAHACTLSDYVRPEF-------TDTLAIKQGWHPILEKISAEKPIANNTYVTE 671 Query 60 PADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 +++ L+ITGPNM GKST L+Q ALC I+AQ+GSYVPA Sbjct 672 GSNF-----------------LIITGPNMSGKSTYLKQIALCQIMAQIGSYVPA 708 > ath:AT4G02070 MSH6; MSH6 (MUTS HOMOLOG 6); damaged DNA binding; K08737 DNA mismatch repair protein MSH6 Length=1324 Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 45/116 (38%), Positives = 60/116 (51%), Gaps = 19/116 (16%) Query 1 VLQSLATFAKTHPGPGMARPKLLPPSEDEEPVLILRNARHPI--AEKLTE-NFVPNDVML 57 VL SLA + ++ G RP + + D P L HP+ + L +FVPN+V + Sbjct 1012 VLISLAFASDSYEGV-RCRPVISGSTSDGVPHLSATGLGHPVLRGDSLGRGSFVPNNVKI 1070 Query 58 NVPADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 + K +L+TGPNMGGKSTLLRQ L VILAQ+G+ VPA Sbjct 1071 G---------------GAEKASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVPA 1111 > cpv:cgd8_3950 MutS like ABC ATpase involved in DNA repair ; K08735 DNA mismatch repair protein MSH2 Length=848 Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 21/83 (25%) Query 36 RNARHPIAE-----KLTENFVPNDVMLNVPADYSSSSNSSSSSSSSKTRTLLITGPNMGG 90 + RHP+ E T FV NDV L+ + S +ITGPNMGG Sbjct 549 KELRHPLIEAQGTVSTTGQFVANDVELHRHGNLLS----------------IITGPNMGG 592 Query 91 KSTLLRQTALCVILAQLGSYVPA 113 KST +RQ A+C +LAQ+G +VPA Sbjct 593 KSTYIRQIAICSLLAQIGCFVPA 615 > hsa:4436 MSH2, COCA1, FCC1, HNPCC, HNPCC1, LCFS2; mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli); K08735 DNA mismatch repair protein MSH2 Length=934 Score = 60.5 bits (145), Expect = 1e-09, Method: Composition-based stats. Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 22/114 (19%) Query 2 LQSLATFAKTHPGPGM--ARPKLLPPSEDEEPVLILRNARHPIAEKLTE-NFVPNDVMLN 58 L ++ +FA G + RP +L E + +IL+ +RH E E F+PNDV Sbjct 602 LDAVVSFAHVSNGAPVPYVRPAIL---EKGQGRIILKASRHACVEVQDEIAFIPNDVYF- 657 Query 59 VPADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVP 112 K +ITGPNMGGKST +RQT + V++AQ+G +VP Sbjct 658 ---------------EKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP 696 > ath:AT3G20475 MSH5; MSH5 (MUTS-HOMOLOGUE 5); ATP binding / damaged DNA binding / mismatched DNA binding; K08741 DNA mismatch repair protein MSH5 Length=807 Score = 60.1 bits (144), Expect = 2e-09, Method: Composition-based stats. Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 17/84 (20%) Query 30 EPVLILRNARHPIAEKLTENFVPNDVMLNVPADYSSSSNSSSSSSSSKTRTLLITGPNMG 89 E +L +RN RH + E + F+PND +N R +ITGPN Sbjct 531 ESLLDIRNGRHVLQEMAVDTFIPNDTEIN-----------------DNGRIHIITGPNYS 573 Query 90 GKSTLLRQTALCVILAQLGSYVPA 113 GKS ++Q AL V L+ +GS+VPA Sbjct 574 GKSIYVKQVALIVFLSHIGSFVPA 597 > mmu:17685 Msh2, AI788990; mutS homolog 2 (E. coli); K08735 DNA mismatch repair protein MSH2 Length=935 Score = 58.5 bits (140), Expect = 5e-09, Method: Composition-based stats. Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 21/110 (19%) Query 4 SLATFAKTHPGPGMARPKLLPPSEDEEPVLILRNARHPIAEKLTE-NFVPNDVMLNVPAD 62 S A + P P RP +L E + +IL+ +RH E E F+PNDV Sbjct 607 SFAHVSNAAPVP-YVRPVIL---EKGKGRIILKASRHACVEVQDEVAFIPNDVHF----- 657 Query 63 YSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVP 112 K +ITGPNMGGKST +RQT + V++AQ+G +VP Sbjct 658 -----------EKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP 696 > mmu:100046843 DNA mismatch repair protein Msh3-like Length=961 Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 24/43 (55%), Positives = 31/43 (72%), Gaps = 0/43 (0%) Query 71 SSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 S R ++ITGPNMGGKS+ ++Q AL I+AQ+GSYVPA Sbjct 706 SGQEQDSERVMIITGPNMGGKSSYIKQVALVTIMAQIGSYVPA 748 > hsa:4439 MSH5, DKFZp434C1615, G7, MGC2939, MUTSH5, NG23; mutS homolog 5 (E. coli); K08741 DNA mismatch repair protein MSH5 Length=834 Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 55/115 (47%), Gaps = 27/115 (23%) Query 1 VLQSLATFAKTHPGPGMARPKLLPPSEDEEPVLILR--NARHPIAEKLTENFVPNDVMLN 58 VL +LA+ A+ + G +RP+ P VL +R N RHP+ E FVPN Sbjct 531 VLLALASAARDY---GYSRPRYSPQ------VLGVRIQNGRHPLMELCARTFVPN----- 576 Query 59 VPADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 S+ K R +ITGPN GKS L+Q L +A +GS+VPA Sbjct 577 -----------STECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPA 620 > mmu:17687 Msh5, G7, Mut5; mutS homolog 5 (E. coli); K08741 DNA mismatch repair protein MSH5 Length=833 Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 52/113 (46%), Gaps = 23/113 (20%) Query 1 VLQSLATFAKTHPGPGMARPKLLPPSEDEEPVLILRNARHPIAEKLTENFVPNDVMLNVP 60 VL +LA+ A+ + G +RP P +RN RHP+ E FVPN Sbjct 530 VLLALASAARDY---GYSRPHYSPCIHGVR----IRNGRHPLMELCARTFVPN------- 575 Query 61 ADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 S+ + R +ITGPN GKS L+Q L +A +GS+VPA Sbjct 576 ---------STDCGGDQGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPA 619 > sce:YHR120W MSH1; DNA-binding protein of the mitochondria involved in repair of mitochondrial DNA, has ATPase activity and binds to DNA mismatches; has homology to E. coli MutS; transcription is induced during meiosis Length=959 Score = 57.0 bits (136), Expect = 1e-08, Method: Composition-based stats. Identities = 37/96 (38%), Positives = 47/96 (48%), Gaps = 23/96 (23%) Query 22 LLPPSEDEEPVLILRNARHPIAE-----KLTENFVPNDVMLNVPADYSSSSNSSSSSSSS 76 L+ P DE L + N RH + E + E F N+ L + Sbjct 721 LVCPKVDESNKLEVVNGRHLMVEEGLSARSLETFTANNCEL------------------A 762 Query 77 KTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVP 112 K +ITGPNMGGKST LRQ A+ VILAQ+G +VP Sbjct 763 KDNLWVITGPNMGGKSTFLRQNAIIVILAQIGCFVP 798 > bbo:BBOV_I003810 19.m02277; DNA mismatch repair enzyme; K08735 DNA mismatch repair protein MSH2 Length=791 Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats. Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 22/113 (19%) Query 2 LQSLATFAKTHPGPGMARPKLLPPSEDEEPVLILRNARHPIAE--KLTENFVPNDVMLNV 59 L L FA+ RP++ E++E L+ NARHP+ E T FVPN + + Sbjct 503 LDILVAFAEAAATLQYVRPEI--DLENKEISLV--NARHPLVECGINTRLFVPNSLYM-- 556 Query 60 PADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVP 112 + + + TGPNMGGKST +RQ + V++ Q+GS+VP Sbjct 557 --------------TRETSLVHITTGPNMGGKSTYIRQVGIIVVMNQIGSFVP 595 > dre:559917 mutS homolog 4-like; K08740 DNA mismatch repair protein MSH4 Length=931 Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 16/81 (19%) Query 33 LILRNARHPIAEKLTENFVPNDVMLNVPADYSSSSNSSSSSSSSKTRTLLITGPNMGGKS 92 L ++ RHP+ E+++ S+NS S S+ ++ITGPNM GKS Sbjct 636 LAIQQGRHPVLERIS-------------GQQPISNNSYISEGSN---FVIITGPNMSGKS 679 Query 93 TLLRQTALCVILAQLGSYVPA 113 T L+Q AL I+AQ+G +VPA Sbjct 680 TFLKQVALVQIMAQIGCFVPA 700 > cel:ZK1127.11 him-14; High Incidence of Males (increased X chromosome loss) family member (him-14); K08740 DNA mismatch repair protein MSH4 Length=842 Score = 51.2 bits (121), Expect = 8e-07, Method: Composition-based stats. Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 18/84 (21%) Query 31 PVLILRNARHPIAE-KLTENFVPNDVMLNVPADYSSSSNSSSSSSSSKTRTLLITGPNMG 89 P + RHPI + +E + ND L + R +ITGPNM Sbjct 550 PSFSISQGRHPILDWDDSEKTITNDTCL-----------------TRDRRFGIITGPNMA 592 Query 90 GKSTLLRQTALCVILAQLGSYVPA 113 GKST L+QTA I+AQ+G ++PA Sbjct 593 GKSTYLKQTAQLAIMAQIGCFIPA 616 > sce:YDR097C MSH6, PMS3; Msh6p; K08737 DNA mismatch repair protein MSH6 Length=1242 Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 19/85 (22%) Query 32 VLILRNARHP---IAEKLTENFVPNDVMLNVPADYSSSSNSSSSSSSSKTRTLLITGPNM 88 L ++ RHP + ++F+PND+ L + R L+TG N Sbjct 942 FLKFKSLRHPCFNLGATTAKDFIPNDIEL----------------GKEQPRLGLLTGANA 985 Query 89 GGKSTLLRQTALCVILAQLGSYVPA 113 GKST+LR + VI+AQ+G YVP Sbjct 986 AGKSTILRMACIAVIMAQMGCYVPC 1010 > dre:570030 msh5; mutS homolog 5 (E. coli); K08741 DNA mismatch repair protein MSH5 Length=793 Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 16/84 (19%) Query 30 EPVLILRNARHPIAEKLTENFVPNDVMLNVPADYSSSSNSSSSSSSSKTRTLLITGPNMG 89 E L L +RHP+ E T FV N + SS ++ + +ITGPN Sbjct 512 EHRLALIESRHPLLELCTSVFVSNTYI----------------SSETEGKVKVITGPNSS 555 Query 90 GKSTLLRQTALCVILAQLGSYVPA 113 GKS L+Q L V +A +GS VPA Sbjct 556 GKSIFLKQVGLIVFMALIGSNVPA 579 > cel:F09E8.3 msh-5; MSH (MutS Homolog) family member (msh-5); K08741 DNA mismatch repair protein MSH5 Length=1369 Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 17/86 (19%) Query 29 EEPVLILRNARHPIAEKLTE-NFVPNDVMLNVPADYSSSSNSSSSSSSSKTRTLLITGPN 87 +EPV+ HPI+ + + +FVPN V SS + +ITGPN Sbjct 598 DEPVIEAVELYHPISVLVVKKSFVPNQV----------------SSGRDGIKASIITGPN 641 Query 88 MGGKSTLLRQTALCVILAQLGSYVPA 113 GKS ++ + V L+ +GS+VPA Sbjct 642 ACGKSVYMKSIGIMVFLSHIGSFVPA 667 > ath:AT5G54090 DNA mismatch repair MutS family protein Length=795 Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 9/55 (16%) Query 59 VPADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 +PAD+ S TR L+ITGPN GGK+ L+ L ++A+ G YV A Sbjct 423 IPADFQISKG---------TRVLVITGPNTGGKTICLKSVGLAAMMAKSGLYVLA 468 > ath:AT3G24320 MSH1; MSH1 (MUTL PROTEIN HOMOLOG 1); ATP binding / catalytic/ damaged DNA binding / mismatched DNA binding / nuclease Length=1118 Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 0/54 (0%) Query 60 PADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVPA 113 P + SS ++ ++ L+TGPN GGKS+LLR +L G VPA Sbjct 743 PYWFDVSSGTAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAAALLGISGLMVPA 796 > tgo:TGME49_018840 mismatch repair protein, putative (EC:2.7.1.127) Length=1944 Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 25/99 (25%) Query 25 PSEDEEPVLILRNARHPIAEKLTENFVPNDVMLNVPADYSSSSNSSSSSSSSKTRT---- 80 P++DE +R P++E++ ++ ++S + +SSS SK R Sbjct 1258 PTDDEFANANRTQSRDPLSEQVQKD--------------TASLLAHASSSLSKEREVVSY 1303 Query 81 -------LLITGPNMGGKSTLLRQTALCVILAQLGSYVP 112 ++TG NM GKST R V+LA + VP Sbjct 1304 SFDMHGLFVLTGENMAGKSTFCRSVLALVVLANAATTVP 1342 > cpv:cgd7_2660 RAD24/Rf-C activator 1 AAA+ ATpase ; K06662 cell cycle checkpoint protein Length=701 Score = 31.2 bits (69), Expect = 0.75, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 0/49 (0%) Query 48 ENFVPNDVMLNVPADYSSSSNSSSSSSSSKTRTLLITGPNMGGKSTLLR 96 E V ++ V + +S S++S + SK L+I GPN GK+T+LR Sbjct 15 ELLVNKHKIIEVKSFLENSFISANSINGSKKNILIIFGPNGAGKTTILR 63 > pfa:PF14_0051 DNA mismatch repair protein, putative Length=1515 Score = 31.2 bits (69), Expect = 0.82, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 0/36 (0%) Query 77 KTRTLLITGPNMGGKSTLLRQTALCVILAQLGSYVP 112 K +L+TG NM GK+TL + L+ LG Y P Sbjct 1048 KKNFILLTGKNMSGKTTLSFTILSILFLSNLGMYAP 1083 Lambda K H 0.311 0.127 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2052546600 Database: egene_temp_file_orthology_annotation_similarity_blast_database_865 Posted date: Sep 17, 2011 11:19 AM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40