bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
164,496 sequences; 82,071,388 total letters
Query= Emax_2025_orf2
Length=134
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_013000 activator 1 36 kDa, putative (EC:2.7.7.7); K... 169 2e-42
bbo:BBOV_II002510 18.m06203; replication factor C3 protein; K1... 159 2e-39
pfa:PF14_0601 replication factor C3; K10756 replication factor... 159 2e-39
tpv:TP04_0380 replication factor C subunit 3; K10756 replicati... 159 3e-39
cpv:cgd3_3170 replication factor RFC3 AAA+ ATpase ; K10756 rep... 138 4e-33
cel:F44B9.8 ARPA; hypothetical protein; K10756 replication fac... 122 3e-28
sce:YNL290W RFC3; Rfc3p; K10756 replication factor C subunit 3/5 119 2e-27
mmu:72151 Rfc5, 2610020K06Rik, 2610209F07Rik, 36.5kDa, 36kDa, ... 119 3e-27
hsa:5985 RFC5, MGC1155, RFC36; replication factor C (activator... 116 2e-26
dre:445385 rfc5, zgc:110313; replication factor C (activator 1... 114 1e-25
xla:443952 MGC80325 protein; K10756 replication factor C subun... 112 3e-25
hsa:5984 RFC4, A1, MGC27291, RFC37; replication factor C (acti... 112 3e-25
ath:AT1G77470 replication factor C 36 kDA, putative; K10756 re... 112 3e-25
dre:406435 rfc4, rcf4, zgc:64030; replication factor C (activa... 110 1e-24
xla:380369 rfc5, MGC53482; replication factor C (activator 1) ... 110 1e-24
mmu:106344 Rfc4, A1, AI894123, AU040575, RFC37; replication fa... 108 4e-24
xla:398706 rfc4, rfc2; replication factor C (activator 1) 4, 3... 107 1e-23
tgo:TGME49_037110 replication factor C small subunit, putative... 107 1e-23
sce:YJR068W RFC2; Rfc2p; K10755 replication factor C subunit 2/4 103 2e-22
ath:AT1G21690 emb1968 (embryo defective 1968); ATP binding / A... 102 2e-22
cel:F58F6.4 rfc-2; RFC (DNA replication factor) family member ... 102 2e-22
pfa:PFL2005w replication factor C subunit 4; K10755 replicatio... 101 5e-22
tpv:TP03_0432 replication factor C subunit 4; K10755 replicati... 101 7e-22
pfa:PFB0840w replication factor C, subunit 2; K10755 replicati... 98.6 4e-21
bbo:BBOV_IV002210 21.m03053; replication factor C subunit 4; K... 97.8 7e-21
sce:YOL094C RFC4; Rfc4p; K10755 replication factor C subunit 2/4 97.8
dre:503748 rfc2, zgc:110810; replication factor C (activator 1... 97.8 8e-21
bbo:BBOV_III002960 17.m07281; hypothetical protein; K10755 rep... 97.1 1e-20
cpv:cgd3_1450 replication factor C like AAA+ ATpase ; K10755 r... 94.0 1e-19
tpv:TP01_0978 replication factor C subunit 2; K10755 replicati... 92.0 4e-19
cpv:cgd8_2940 replication factor C like AAA ATpase ; K10755 re... 90.9 9e-19
xla:431883 rfc2, MGC81391, rfc40; replication factor C (activa... 90.9 9e-19
cel:F31E3.3 rfc-4; RFC (DNA replication factor) family member ... 90.5 1e-18
tgo:TGME49_010960 replication factor C subunit, putative (EC:2... 89.7 2e-18
mmu:19718 Rfc2, 2610008M13Rik, 40kDa, AI326953, MGC117486, Rec... 89.7 2e-18
ath:AT1G63160 replication factor C 40 kDa, putative; K10755 re... 88.6 4e-18
ath:AT5G27740 EMB2775 (EMBRYO DEFECTIVE 2775); DNA binding / n... 63.2 2e-10
mmu:69263 Rfc3, 2810416I22Rik, 38kDa, AU022547, Recc3; replica... 61.2 8e-10
sce:YBR087W RFC5; Rfc5p; K10756 replication factor C subunit 3/5 61.2
hsa:5983 RFC3, MGC5276, RFC38; replication factor C (activator... 60.1 2e-09
cel:C39E9.13 rfc-3; RFC (DNA replication factor) family member... 60.1 2e-09
hsa:5982 RFC2, A1, MGC3665, RFC40; replication factor C (activ... 58.2 6e-09
xla:734626 rfc3, MGC115007; replication factor C (activator 1)... 57.8 9e-09
tgo:TGME49_073950 replication factor C, putative (EC:2.7.7.7);... 57.8 9e-09
bbo:BBOV_IV003080 21.m02902; replication factor C 38 kDa subun... 54.3 9e-08
dre:259256 rfc3, cb275; replication factor C (activator 1) 3; ... 53.5 2e-07
cpv:cgd2_3180 replication factor C subunit 5 ; K10756 replicat... 50.8 1e-06
pfa:PF11_0117 replication factor C subunit 5, putative; K10756... 49.7 2e-06
tpv:TP01_1062 replication factor C subunit 5; K10756 replicati... 40.0 0.002
tpv:TP03_0565 replication factor C large subunit; K10754 repli... 38.5 0.006
> tgo:TGME49_013000 activator 1 36 kDa, putative (EC:2.7.7.7);
K10756 replication factor C subunit 3/5
Length=398
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/156 (57%), Positives = 105/156 (67%), Gaps = 23/156 (14%)
Query 1 YGSQQASHVLEINASYDRGIGSVRELVKTFAETTSASFS---------------LSGAAS 45
YGS +HVLE+NAS DRGI +VRE +KTFAET+S SF + A S
Sbjct 93 YGSAVRTHVLELNASDDRGINTVREQIKTFAETSSTSFQQNRLIFGKSAVPATEAAEATS 152
Query 46 S--------GPPKLKLIILDEADQMTSAAQNALRRIMETYARNVRFCLICDFVNKITPAI 97
S G P LKLIILDEADQMT+AAQNALRRIME YARNVRFCLIC+FVNKITPAI
Sbjct 153 SHGQEKKGQGGPSLKLIILDEADQMTNAAQNALRRIMEAYARNVRFCLICNFVNKITPAI 212
Query 98 QSRCTSMRFTPLKPEALRRKAEEAAMLESMSVTEGG 133
QSRCT RFTP+ +L+ KA + E M +++ G
Sbjct 213 QSRCTGFRFTPVSSASLKTKAAQIVQDEKMKLSDDG 248
> bbo:BBOV_II002510 18.m06203; replication factor C3 protein;
K10756 replication factor C subunit 3/5
Length=348
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/132 (58%), Positives = 101/132 (76%), Gaps = 1/132 (0%)
Query 1 YGSQQASHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGP-PKLKLIILDEA 59
YGS + S+V+E+NAS +RGI +VRE +KTFAET++ S + SGP LKLIILDEA
Sbjct 65 YGSHRHSYVMELNASDERGIETVREQIKTFAETSNTFSSGIVGSDSGPRTNLKLIILDEA 124
Query 60 DQMTSAAQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAE 119
DQMT+AAQN+LRRIME Y+ NVRFCLIC+F+N+I P IQSRCT RF PLK + ++R+
Sbjct 125 DQMTNAAQNSLRRIMEIYSSNVRFCLICNFMNRIIPPIQSRCTGFRFPPLKNDVVKRRTA 184
Query 120 EAAMLESMSVTE 131
+ A E ++V+E
Sbjct 185 DIAKAEGLTVSE 196
> pfa:PF14_0601 replication factor C3; K10756 replication factor
C subunit 3/5
Length=344
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/133 (57%), Positives = 99/133 (74%), Gaps = 6/133 (4%)
Query 1 YGSQQASHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEAD 60
YG +++S VLE+NAS DRGI +R+ +KTFAE S + + LKLIILDEAD
Sbjct 71 YGDKRSSFVLELNASDDRGINVIRDQIKTFAE------SKNHYTTCEKTTLKLIILDEAD 124
Query 61 QMTSAAQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAEE 120
MT AQNA+RRIME YA+NVRFCL+C++VNKITPAIQSRCT+ RF PLK E ++ KA +
Sbjct 125 HMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALD 184
Query 121 AAMLESMSVTEGG 133
A E++++TEGG
Sbjct 185 IAKSENVNLTEGG 197
> tpv:TP04_0380 replication factor C subunit 3; K10756 replication
factor C subunit 3/5
Length=347
Score = 159 bits (401), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 79/133 (59%), Positives = 100/133 (75%), Gaps = 4/133 (3%)
Query 1 YGSQQASHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPK--LKLIILDE 58
YGSQ+ VLE+NAS +RGI +VR+ +K F+ET S +F+ S PP+ LKLIILDE
Sbjct 65 YGSQRNGFVLELNASDERGIDTVRDQIKAFSET-SNTFT-STMPVDDPPRTNLKLIILDE 122
Query 59 ADQMTSAAQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKA 118
ADQMT+AAQNALRRIME Y+ NVRFCLIC+F+NKI P IQSRCT RF PLK + +R +
Sbjct 123 ADQMTNAAQNALRRIMEIYSNNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKSDVVRERI 182
Query 119 EEAAMLESMSVTE 131
E A LE++ +T+
Sbjct 183 REIAKLENVKITD 195
> cpv:cgd3_3170 replication factor RFC3 AAA+ ATpase ; K10756 replication
factor C subunit 3/5
Length=383
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 95/153 (62%), Gaps = 20/153 (13%)
Query 1 YGSQQASHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPP----------- 49
Y ++ VLE+NAS DRGI VR+ +K+F+E+ S + + SG +S
Sbjct 70 YKDRKYQMVLELNASDDRGINVVRDAIKSFSESASTTLNHSGGTNSNIEDIEMSDVSTRN 129
Query 50 ---------KLKLIILDEADQMTSAAQNALRRIMETYARNVRFCLICDFVNKITPAIQSR 100
+KLIILDEAD MTS AQ ALRRIME Y+ +VRFC+IC++VNKITPA+QSR
Sbjct 130 LDCNKSLCENIKLIILDEADMMTSTAQMALRRIMERYSEHVRFCIICNYVNKITPALQSR 189
Query 101 CTSMRFTPLKPEALRRKAEEAAMLESMSVTEGG 133
CT RF+PL E +R + E A+ E + +T G
Sbjct 190 CTRFRFSPLPIEDIRNRISEIALSERIFITREG 222
> cel:F44B9.8 ARPA; hypothetical protein; K10756 replication factor
C subunit 3/5
Length=368
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 84/131 (64%), Gaps = 1/131 (0%)
Query 3 SQQASHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQM 62
++ AS VLE+NAS +RGI VR + FA+T + S ++++G KL+ILDEAD M
Sbjct 90 TKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQ-AFSTSSNTGTVPFKLVILDEADAM 148
Query 63 TSAAQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAEEAA 122
T AQNALRR++E Y NVRFC+IC+++ I PAIQSRCT RF PL + + + E
Sbjct 149 TKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEYIV 208
Query 123 MLESMSVTEGG 133
E + +T G
Sbjct 209 ETEQLKMTPDG 219
> sce:YNL290W RFC3; Rfc3p; K10756 replication factor C subunit
3/5
Length=340
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 83/130 (63%), Gaps = 10/130 (7%)
Query 1 YGSQQASHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEAD 60
YG ++ VLE+NAS DRGI VR +K FA +T FS KLIILDEAD
Sbjct 71 YGKNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFS---------KGFKLIILDEAD 120
Query 61 QMTSAAQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAEE 120
MT+AAQNALRR++E Y +N RFC++ ++ +K+TPA+ SRCT RF PL EA+ R+
Sbjct 121 AMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIAN 180
Query 121 AAMLESMSVT 130
+ E + ++
Sbjct 181 VLVHEKLKLS 190
> mmu:72151 Rfc5, 2610020K06Rik, 2610209F07Rik, 36.5kDa, 36kDa,
MGC113787, Recc5; replication factor C (activator 1) 5; K10756
replication factor C subunit 3/5
Length=339
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 80/128 (62%), Gaps = 10/128 (7%)
Query 6 ASHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQMTSA 65
S VLE+NAS DRGI VR + +FA T + G KL+ILDEAD MT
Sbjct 83 GSMVLELNASDDRGIDIVRGPILSFASTRTI-------FKKG---FKLVILDEADAMTQD 132
Query 66 AQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAEEAAMLE 125
AQNALRR++E + N RFCLIC++++KI PA+QSRCT RF PL PE + + E E
Sbjct 133 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEE 192
Query 126 SMSVTEGG 133
++ ++E G
Sbjct 193 NVDISEDG 200
> hsa:5985 RFC5, MGC1155, RFC36; replication factor C (activator
1) 5, 36.5kDa; K10756 replication factor C subunit 3/5
Length=255
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 77/125 (61%), Gaps = 10/125 (8%)
Query 9 VLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQMTSAAQN 68
VLE+NAS DRGI +R + +FA T + KL+ILDEAD MT AQN
Sbjct 2 VLELNASDDRGIDIIRGPILSFASTRTIF----------KKGFKLVILDEADAMTQDAQN 51
Query 69 ALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAEEAAMLESMS 128
ALRR++E + N RFCLIC++++KI PA+QSRCT RF PL PE + + E E +
Sbjct 52 ALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVD 111
Query 129 VTEGG 133
++E G
Sbjct 112 ISEDG 116
> dre:445385 rfc5, zgc:110313; replication factor C (activator
1) 5; K10756 replication factor C subunit 3/5
Length=334
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 77/127 (60%), Gaps = 10/127 (7%)
Query 7 SHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQMTSAA 66
S VLE+NAS DRGI VR + +FA T + G KL+ILDEAD MT A
Sbjct 79 SMVLELNASDDRGIDVVRGPILSFASTRTI-------FKKG---FKLVILDEADAMTQDA 128
Query 67 QNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAEEAAMLES 126
QNALRR++E + N RFCLIC++++KI PA+QSRCT RF PL + + E ES
Sbjct 129 QNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQES 188
Query 127 MSVTEGG 133
+ +T G
Sbjct 189 IDITPDG 195
> xla:443952 MGC80325 protein; K10756 replication factor C subunit
3/5
Length=335
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 76/127 (59%), Gaps = 10/127 (7%)
Query 7 SHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQMTSAA 66
S VLE+NAS DRGI VR V +FA T + KL+ILDEAD MT A
Sbjct 80 SMVLELNASDDRGIDIVRGPVLSFASTRTIF----------KKGFKLVILDEADAMTQDA 129
Query 67 QNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAEEAAMLES 126
QNALRR++E + N RFCLIC++++KI PA+QSRCT RF PL E + + E E
Sbjct 130 QNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSSEMMIPRLEHVVKEEH 189
Query 127 MSVTEGG 133
+ ++ G
Sbjct 190 VDISPDG 196
> hsa:5984 RFC4, A1, MGC27291, RFC37; replication factor C (activator
1) 4, 37kDa; K10755 replication factor C subunit 2/4
Length=363
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 84/128 (65%), Gaps = 7/128 (5%)
Query 8 HVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPP--KLKLIILDEADQMTSA 65
VLE+NAS +RGI VRE VK FA+ T +SG+ S G P K++ILDEAD MTSA
Sbjct 104 RVLELNASDERGIQVVREKVKNFAQLT-----VSGSRSDGKPCPPFKIVILDEADSMTSA 158
Query 66 AQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAEEAAMLE 125
AQ ALRR ME ++ RFCLIC++V++I + SRC+ RF PL + +++ + A E
Sbjct 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKE 218
Query 126 SMSVTEGG 133
++ +++ G
Sbjct 219 NVKISDEG 226
> ath:AT1G77470 replication factor C 36 kDA, putative; K10756
replication factor C subunit 3/5
Length=369
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 83/133 (62%), Gaps = 8/133 (6%)
Query 1 YGSQQASHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEAD 60
YG + + +LE+NAS DRGI VR+ ++ FA T SFSL G +KL++LDEAD
Sbjct 97 YGPKYRNMILELNASDDRGIDVVRQQIQDFAST--QSFSL------GKSSVKLVLLDEAD 148
Query 61 QMTSAAQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAEE 120
MT AQ ALRR++E Y ++ RF LI + VNKI PA+QSRCT RF PL + ++ +
Sbjct 149 AMTKDAQFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKH 208
Query 121 AAMLESMSVTEGG 133
E + V++ G
Sbjct 209 VIEAERLVVSDCG 221
> dre:406435 rfc4, rcf4, zgc:64030; replication factor C (activator
1) 4; K10755 replication factor C subunit 2/4
Length=358
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 76/126 (60%), Gaps = 3/126 (2%)
Query 8 HVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQMTSAAQ 67
VLE+NAS +RGI VRE VK FA+ T A G P K+IILDEAD MTSAAQ
Sbjct 99 RVLELNASDERGIQVVREKVKRFAQLTVAGTRPDGKTC---PPFKIIILDEADSMTSAAQ 155
Query 68 NALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAEEAAMLESM 127
ALRR ME +R RFCLIC++V++I + SRC+ RF PL + + + E E++
Sbjct 156 AALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLANDVQQERILEICRKENL 215
Query 128 SVTEGG 133
T G
Sbjct 216 KYTTEG 221
> xla:380369 rfc5, MGC53482; replication factor C (activator 1)
5, 36.5kDa; K10756 replication factor C subunit 3/5
Length=335
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 76/127 (59%), Gaps = 10/127 (7%)
Query 7 SHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQMTSAA 66
S VLE+NAS DRGI VR + +FA T + KL+ILDEAD MT A
Sbjct 80 SMVLELNASDDRGIDIVRGPILSFASTRTIF----------KKGFKLVILDEADAMTQDA 129
Query 67 QNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAEEAAMLES 126
QNALRR++E + N RFCLIC++++KI PA+QSRCT RF PL + + + E E
Sbjct 130 QNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSSDMMIPRLEHVVKEER 189
Query 127 MSVTEGG 133
+ ++ G
Sbjct 190 VDISPDG 196
> mmu:106344 Rfc4, A1, AI894123, AU040575, RFC37; replication
factor C (activator 1) 4; K10755 replication factor C subunit
2/4
Length=364
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 80/123 (65%), Gaps = 7/123 (5%)
Query 9 VLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPP--KLKLIILDEADQMTSAA 66
VLE+NAS +RGI VRE VK FA+ T +SG+ S G P K++ILDEAD MTSAA
Sbjct 105 VLELNASDERGIQVVREKVKNFAQLT-----VSGSRSDGKPCPPFKIVILDEADSMTSAA 159
Query 67 QNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAEEAAMLES 126
Q ALRR ME ++ RFCLIC++V++I + SRC+ RF PL + + + + A E+
Sbjct 160 QAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKEN 219
Query 127 MSV 129
+ +
Sbjct 220 VKI 222
> xla:398706 rfc4, rfc2; replication factor C (activator 1) 4,
37kDa; K10755 replication factor C subunit 2/4
Length=363
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 69/104 (66%), Gaps = 7/104 (6%)
Query 8 HVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPP--KLKLIILDEADQMTSA 65
VLE+NAS +RGI VRE VK FA+ T + G S G P K+IILDEAD MTSA
Sbjct 103 RVLELNASDERGIQVVREKVKNFAQLT-----VGGTRSDGKPCPPFKIIILDEADSMTSA 157
Query 66 AQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPL 109
AQ ALRR ME ++ RFCLIC++V++I + SRC+ RF PL
Sbjct 158 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPL 201
> tgo:TGME49_037110 replication factor C small subunit, putative
(EC:2.7.7.7); K10755 replication factor C subunit 2/4
Length=357
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 81/134 (60%), Gaps = 1/134 (0%)
Query 1 YGSQQASH-VLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEA 59
+G ++A + +LE+NAS DRGI VRE +K + +T A ++ P K++ILDEA
Sbjct 89 FGREEAKNRLLELNASDDRGIKVVRERIKQYTKTNIAKGKINPETGREMPTWKIVILDEA 148
Query 60 DQMTSAAQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAE 119
D MT AQ+ALRRIME ++R RF +IC++V++I I SRC+ RF P+ +A +
Sbjct 149 DMMTQDAQSALRRIMEAFSRTTRFIIICNYVHRIIDPIFSRCSPHRFEPVARDAQEARIR 208
Query 120 EAAMLESMSVTEGG 133
E + VT G
Sbjct 209 HICDSEGLVVTSGA 222
> sce:YJR068W RFC2; Rfc2p; K10755 replication factor C subunit
2/4
Length=353
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 67/103 (65%), Gaps = 0/103 (0%)
Query 7 SHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQMTSAA 66
S +LE+NAS +RGI VRE VK FA T + S + P K+IILDEAD MT+ A
Sbjct 90 SRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADA 149
Query 67 QNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPL 109
Q+ALRR METY+ RFCLIC++V +I + SRC+ RF L
Sbjct 150 QSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKAL 192
> ath:AT1G21690 emb1968 (embryo defective 1968); ATP binding /
ATPase/ DNA binding / DNA clamp loader/ nucleoside-triphosphatase/
nucleotide binding; K10755 replication factor C subunit
2/4
Length=339
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 72/124 (58%), Gaps = 4/124 (3%)
Query 7 SHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGP-PKLKLIILDEADQMTSA 65
S VLE+NAS DRGI VR +K FA S + S P P K+IILDEAD MT
Sbjct 74 SRVLELNASDDRGINVVRTKIKDFAAVAVGS---NHRQSGYPCPSFKIIILDEADSMTED 130
Query 66 AQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAEEAAMLE 125
AQNALRR METY++ RF IC+++++I + SRC RF PL E + + E
Sbjct 131 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEE 190
Query 126 SMSV 129
+S+
Sbjct 191 GLSL 194
> cel:F58F6.4 rfc-2; RFC (DNA replication factor) family member
(rfc-2); K10755 replication factor C subunit 2/4
Length=334
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 74/132 (56%), Gaps = 9/132 (6%)
Query 2 GSQQASHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQ 61
G + VLE+NAS +RGI VR +KTFA+T + + K+IILDEAD
Sbjct 69 GDKVKEAVLELNASDERGIDVVRHRIKTFAQT---------KVTLPEGRHKIIILDEADS 119
Query 62 MTSAAQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAEEA 121
MT AQ ALRR ME Y + RF L C+ KI IQSRC +R+T L P L + +E
Sbjct 120 MTDGAQQALRRTMEMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTRVKEV 179
Query 122 AMLESMSVTEGG 133
A E ++ +GG
Sbjct 180 AKAEKVNYDDGG 191
> pfa:PFL2005w replication factor C subunit 4; K10755 replication
factor C subunit 2/4
Length=336
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 78/132 (59%), Gaps = 9/132 (6%)
Query 2 GSQQASHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQ 61
G+Q VLE+NAS DRGI +R+ +K+FA+ S P K K+IILDE D
Sbjct 75 GNQAKKAVLELNASDDRGINVIRDRIKSFAKEI---------ISLPPGKHKIIILDEVDS 125
Query 62 MTSAAQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAEEA 121
MT+AAQ +LRRIME Y+ RF L C+ KI A+QSRC +R+ L + + ++ +
Sbjct 126 MTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRILKI 185
Query 122 AMLESMSVTEGG 133
LE++ T+ G
Sbjct 186 CDLENIKYTDDG 197
> tpv:TP03_0432 replication factor C subunit 4; K10755 replication
factor C subunit 2/4
Length=324
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 78/132 (59%), Gaps = 9/132 (6%)
Query 2 GSQQASHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQ 61
G+ S V+E+NAS DRG+ VRE +K FA+ S L P K K++ILDE D
Sbjct 65 GTHFKSAVIELNASDDRGVDVVRESIKNFAK---KSLVLP------PNKHKIVILDEVDS 115
Query 62 MTSAAQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAEEA 121
MT AQ ALRRIME Y+ RF L C+ NKI IQSRC +R++ L+ E + ++
Sbjct 116 MTEPAQQALRRIMELYSSTTRFALACNQSNKIIEPIQSRCAVIRYSKLQDEQILKRLVTI 175
Query 122 AMLESMSVTEGG 133
+E+++ T+ G
Sbjct 176 CDMENLTYTDEG 187
> pfa:PFB0840w replication factor C, subunit 2; K10755 replication
factor C subunit 2/4
Length=330
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 75/134 (55%), Gaps = 1/134 (0%)
Query 1 YGSQQASH-VLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEA 59
+G + S VLE+NAS DRGI VRE +K + + + + P KL++LDEA
Sbjct 62 FGKENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEA 121
Query 60 DQMTSAAQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAE 119
D MT AQ+ALRRI+E Y+ RF LIC++++KI+ I SRC+ RF + + K
Sbjct 122 DMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLL 181
Query 120 EAAMLESMSVTEGG 133
E++ + +
Sbjct 182 YICQNENIDIVDDA 195
> bbo:BBOV_IV002210 21.m03053; replication factor C subunit 4;
K10755 replication factor C subunit 2/4
Length=306
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 73/132 (55%), Gaps = 9/132 (6%)
Query 2 GSQQASHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQ 61
G+ + VLE+NAS DRG+ VR +K FA+ + P K K+IILDE D
Sbjct 63 GNHFKNAVLELNASDDRGVDVVRGAIKNFAKKSVVL---------PPNKHKIIILDEVDS 113
Query 62 MTSAAQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAEEA 121
MT AAQ ALRRIME Y++ RF L C+ KI IQSRC +R+ PL+ E + +
Sbjct 114 MTEAAQQALRRIMEIYSKTTRFALACNQSTKIIEPIQSRCAVIRYEPLQDEMILTRLIHI 173
Query 122 AMLESMSVTEGG 133
E++ T G
Sbjct 174 CKEENVQYTNDG 185
> sce:YOL094C RFC4; Rfc4p; K10755 replication factor C subunit
2/4
Length=323
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 73/132 (55%), Gaps = 9/132 (6%)
Query 2 GSQQASHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQ 61
G A VLE+NAS DRGI VR +K FA+ L P K K++ILDEAD
Sbjct 68 GRSYADGVLELNASDDRGIDVVRNQIKHFAQ---KKLHLP------PGKHKIVILDEADS 118
Query 62 MTSAAQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAEEA 121
MT+ AQ ALRR ME Y+ + RF C+ NKI +QSRC +R++ L E + ++ +
Sbjct 119 MTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQI 178
Query 122 AMLESMSVTEGG 133
LE + T G
Sbjct 179 IKLEDVKYTNDG 190
> dre:503748 rfc2, zgc:110810; replication factor C (activator
1) 2; K10755 replication factor C subunit 2/4
Length=349
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 73/132 (55%), Gaps = 9/132 (6%)
Query 2 GSQQASHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQ 61
G VLE+NAS DRGI VR +K FA+ +L + K+IILDEAD
Sbjct 90 GPAMKDAVLELNASNDRGIDVVRNKIKMFAQ---QKVTLPKG------RHKIIILDEADS 140
Query 62 MTSAAQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAEEA 121
MT AQ ALRR ME Y++ RF L C+ +KI IQSRC +R++ L+ E + + E
Sbjct 141 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEV 200
Query 122 AMLESMSVTEGG 133
E++ VT G
Sbjct 201 VEKENLHVTNDG 212
> bbo:BBOV_III002960 17.m07281; hypothetical protein; K10755 replication
factor C subunit 2/4
Length=336
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 67/105 (63%), Gaps = 0/105 (0%)
Query 9 VLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQMTSAAQN 68
VLE+NAS +RGI VRE +KT+ +S ++ P K+IILDEAD +T AQ
Sbjct 72 VLELNASDERGINVVRERIKTYTRLNISSNRVNTQTGRVMPNFKMIILDEADMITPDAQA 131
Query 69 ALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEA 113
ALRRI+E ++ RF LIC++V+KI I SRC++ F P+ +A
Sbjct 132 ALRRIIENFSNISRFILICNYVHKIIGPIYSRCSAFHFKPISQDA 176
> cpv:cgd3_1450 replication factor C like AAA+ ATpase ; K10755
replication factor C subunit 2/4
Length=339
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 75/132 (56%), Gaps = 9/132 (6%)
Query 2 GSQQASHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQ 61
GS+ VLE+NAS DRGI VR+ +K+FA L + K++ILDE D
Sbjct 75 GSKYGRAVLELNASDDRGIDVVRDKIKSFAR---EKIDLPEG------RHKIVILDEVDS 125
Query 62 MTSAAQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAEEA 121
MT +AQ ALRR+ME Y+ + RF L C+ KI IQSRC +R++ L +R++ E
Sbjct 126 MTDSAQQALRRLMEVYSESTRFALACNQSTKIIEPIQSRCAIIRYSKLTDAQIRKRLFEI 185
Query 122 AMLESMSVTEGG 133
+E++ + G
Sbjct 186 IKMENIPYVDSG 197
> tpv:TP01_0978 replication factor C subunit 2; K10755 replication
factor C subunit 2/4
Length=335
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 67/102 (65%), Gaps = 0/102 (0%)
Query 9 VLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQMTSAAQN 68
VLE+NAS +RGI VR+ +KT+ ++ ++ + P K+IILDEAD +T+ AQ
Sbjct 74 VLELNASDERGIDVVRDRIKTYTRINISNNRVNPETNRVMPNYKMIILDEADMITADAQA 133
Query 69 ALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLK 110
ALRR++E Y+ RF LIC++++KI I SRC+ F P++
Sbjct 134 ALRRVIENYSSISRFVLICNYLHKIIGPIYSRCSVFHFKPIE 175
> cpv:cgd8_2940 replication factor C like AAA ATpase ; K10755
replication factor C subunit 2/4
Length=335
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 75/130 (57%), Gaps = 0/130 (0%)
Query 3 SQQASHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQM 62
++ + +LE+NAS +RGI VR+ +K++ + P K++ILDEA+ M
Sbjct 68 NEYKNRILELNASDERGISVVRDKIKSWTRQVVQCNKTHEITGNLLPSWKIVILDEAEMM 127
Query 63 TSAAQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAEEAA 122
T+ AQ+ALRRI+E ++N RF +IC++++KI + SRC RF P+ + + +
Sbjct 128 TADAQSALRRIIEVSSKNTRFVIICNYISKIIEPLASRCAKFRFQPISANSQIERLKYIC 187
Query 123 MLESMSVTEG 132
E +S +G
Sbjct 188 SQEDVSYEDG 197
> xla:431883 rfc2, MGC81391, rfc40; replication factor C (activator
1) 2, 40kDa; K10755 replication factor C subunit 2/4
Length=348
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 69/132 (52%), Gaps = 9/132 (6%)
Query 2 GSQQASHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQ 61
G VLE+NAS DRGI VR +K FA+ + + K+IILDEAD
Sbjct 90 GPTMKDAVLELNASNDRGIDVVRNKIKMFAQQK---------VTLPKGRHKIIILDEADS 140
Query 62 MTSAAQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAEEA 121
MT AQ ALRR ME Y++ RF L C+ +KI IQSRC +R+T L + + +
Sbjct 141 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMDV 200
Query 122 AMLESMSVTEGG 133
E + T+ G
Sbjct 201 VEKEKVQCTDDG 212
> cel:F31E3.3 rfc-4; RFC (DNA replication factor) family member
(rfc-4); K10755 replication factor C subunit 2/4
Length=334
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 5/106 (4%)
Query 7 SHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQMTSAA 66
VL++NAS +RGI VR+ +++F+++ SL + KLK+IILDE D MT A
Sbjct 80 DRVLDLNASDERGIAVVRQKIQSFSKS-----SLGHSHREDVLKLKIIILDEVDAMTREA 134
Query 67 QNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPE 112
Q A+RR++E +++ RF LIC++V+++ P + SRC RF L E
Sbjct 135 QAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAE 180
> tgo:TGME49_010960 replication factor C subunit, putative (EC:2.7.7.7);
K10755 replication factor C subunit 2/4
Length=336
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 73/132 (55%), Gaps = 9/132 (6%)
Query 2 GSQQASHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQ 61
GS+ ++ LE+NAS +R I +RE VK FA+ L + K++ILDE D
Sbjct 91 GSRWRAYTLELNASDERTIDVIREKVKHFAKEKR---DLPAG------RHKIVILDEVDA 141
Query 62 MTSAAQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAEEA 121
MT AAQ ALRRIME ++ RF L C+ + +QSRC +RF L L R+ +
Sbjct 142 MTEAAQQALRRIMEQFSDTTRFALACNSSASVIEPLQSRCAILRFRKLDDSQLVRRLRQV 201
Query 122 AMLESMSVTEGG 133
+E++ VT+ G
Sbjct 202 CAMEALQVTDDG 213
> mmu:19718 Rfc2, 2610008M13Rik, 40kDa, AI326953, MGC117486, Recc2;
replication factor C (activator 1) 2; K10755 replication
factor C subunit 2/4
Length=349
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 61/101 (60%), Gaps = 9/101 (8%)
Query 9 VLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQMTSAAQN 68
VLE+NAS DRGI VR +K FA+ +L + K+IILDEAD MT AQ
Sbjct 97 VLELNASNDRGIDVVRNKIKMFAQQ---KVTLPKG------RHKIIILDEADSMTDGAQQ 147
Query 69 ALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPL 109
ALRR ME Y++ RF L C+ +KI IQSRC +R+T L
Sbjct 148 ALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKL 188
> ath:AT1G63160 replication factor C 40 kDa, putative; K10755
replication factor C subunit 2/4
Length=333
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 65/113 (57%), Gaps = 9/113 (7%)
Query 2 GSQQASHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQ 61
G+ VLE+NAS DRGI VR +K FA+ + P + K++ILDEAD
Sbjct 74 GTNYKEAVLELNASDDRGIDVVRNKIKMFAQKK---------VTLPPGRHKVVILDEADS 124
Query 62 MTSAAQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEAL 114
MTS AQ ALRR +E Y+ + RF L C+ KI IQSRC +RF+ L + +
Sbjct 125 MTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQI 177
> ath:AT5G27740 EMB2775 (EMBRYO DEFECTIVE 2775); DNA binding /
nucleoside-triphosphatase/ nucleotide binding; K10756 replication
factor C subunit 3/5
Length=354
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 9/116 (7%)
Query 17 DRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQMTSAAQNALRRIMET 76
DR I V+E++K A+ + G K+++L+E D+++ AQ++LRR ME
Sbjct 106 DRYI--VQEIIKEMAKNRPID-------TKGKKGYKVLVLNEVDKLSREAQHSLRRTMEK 156
Query 77 YARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPEALRRKAEEAAMLESMSVTEG 132
Y+ + R L C+ +K+T AI+SRC ++R E + + E A ES+ + +G
Sbjct 157 YSSSCRLILCCNSSSKVTEAIKSRCLNVRINAPSQEEIVKVLEFVAKKESLQLPQG 212
> mmu:69263 Rfc3, 2810416I22Rik, 38kDa, AU022547, Recc3; replication
factor C (activator 1) 3; K10756 replication factor C
subunit 3/5
Length=356
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Query 6 ASHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQMTSA 65
+++ LE+N S D G S R +++ +T + S L +S K+++L E D++T
Sbjct 89 SNYHLEVNPS-DAG-NSDRVVIQEMLKTVAQSQQLE---TSSQRDFKVVLLTEVDKLTKD 143
Query 66 AQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMR 105
AQ+ALRR ME Y R L C+ +K+ P I+SRC ++R
Sbjct 144 AQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVR 183
> sce:YBR087W RFC5; Rfc5p; K10756 replication factor C subunit
3/5
Length=354
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 6/85 (7%)
Query 23 VRELVKTFAETTSASF--SLSGAASSGPPKLKLIILDEADQMTSAAQNALRRIMETYARN 80
++EL+K A+ F S G A + K +I++EA+ +T AQ ALRR ME Y++N
Sbjct 109 IQELLKEVAQMEQVDFQDSKDGLAH----RYKCVIINEANSLTKDAQAALRRTMEKYSKN 164
Query 81 VRFCLICDFVNKITPAIQSRCTSMR 105
+R ++CD ++ I I+SRC +R
Sbjct 165 IRLIMVCDSMSPIIAPIKSRCLLIR 189
> hsa:5983 RFC3, MGC5276, RFC38; replication factor C (activator
1) 3, 38kDa; K10756 replication factor C subunit 3/5
Length=356
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Query 6 ASHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQMTSA 65
+++ LE+N S D G S R +++ +T + S L ++ K+++L E D++T
Sbjct 89 SNYHLEVNPS-DAG-NSDRVVIQEMLKTVAQSQQLE---TNSQRDFKVVLLTEVDKLTKD 143
Query 66 AQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMR 105
AQ+ALRR ME Y R L C+ +K+ P I+SRC ++R
Sbjct 144 AQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVR 183
> cel:C39E9.13 rfc-3; RFC (DNA replication factor) family member
(rfc-3); K10756 replication factor C subunit 3/5
Length=354
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 9/86 (10%)
Query 16 YDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQMTSAAQNALRRIME 75
YDR + V++LVK A+T S S+ K+++L EAD +T AQ+ LRR ME
Sbjct 105 YDRVV--VQDLVKEMAQT-------SQIESTSQRSFKVVVLCEADSLTRDAQHGLRRTME 155
Query 76 TYARNVRFCLICDFVNKITPAIQSRC 101
YA N + L C+ +++I +QSRC
Sbjct 156 KYANNCKIVLSCESLSRIIEPLQSRC 181
> hsa:5982 RFC2, A1, MGC3665, RFC40; replication factor C (activator
1) 2, 40kDa; K10755 replication factor C subunit 2/4
Length=320
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query 49 PKLKLIILD---EADQMTSAAQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMR 105
P LK +L+ D MT AQ ALRR ME Y++ RF L C+ +KI IQSRC +R
Sbjct 96 PALKDAMLELNASNDSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLR 155
Query 106 FTPL 109
+T L
Sbjct 156 YTKL 159
> xla:734626 rfc3, MGC115007; replication factor C (activator
1) 3, 38kDa; K10756 replication factor C subunit 3/5
Length=356
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 13/104 (12%)
Query 6 ASHVLEINAS----YDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQ 61
+++ LE+N S DR + ++EL+KT A++ +S K+++L E D+
Sbjct 89 SNYHLEVNPSDAGNSDRVV--IQELLKTVAQSQQLE-------TSTQRDFKVVLLTEVDK 139
Query 62 MTSAAQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMR 105
+T AQ+ALRR ME Y R L C+ +K+ I+SRC ++R
Sbjct 140 LTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIAPIRSRCLAVR 183
> tgo:TGME49_073950 replication factor C, putative (EC:2.7.7.7);
K10756 replication factor C subunit 3/5
Length=396
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 57/93 (61%), Gaps = 7/93 (7%)
Query 17 DRGIGSVRELVKTFAETTS----ASFSLSGAASSGPPKLKLIILDEADQMTSAAQNALRR 72
DR I V+ ++K AE+T+ +SF + ASS PP K+ I +AD ++ +AQ+ALRR
Sbjct 100 DRAI--VQSIIKDIAESTTLSGVSSFFAAPKASSVPP-FKICIFQDADLLSESAQHALRR 156
Query 73 IMETYARNVRFCLICDFVNKITPAIQSRCTSMR 105
+E Y+ ++F + + + + + ++SRC +R
Sbjct 157 TLEIYSSRLKFVFLVERLERFSAPLKSRCFCVR 189
> bbo:BBOV_IV003080 21.m02902; replication factor C 38 kDa subunit;
K10756 replication factor C subunit 3/5
Length=349
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query 5 QASHVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQMTS 64
Q+ H ++I S D G R +V+ T SAS S S GP ++ + ++AD ++
Sbjct 86 QSDHHIQIPCS-DLG-SRDRVIVQDIIRTLSASPSASNYFMKGP-SFRVFLFEDADALSL 142
Query 65 AAQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMR 105
AQ ALRR METY +N R L + +++I ++SRC +R
Sbjct 143 PAQAALRRTMETYIKNARMILHVNQLSRIMLPLRSRCLCIR 183
> dre:259256 rfc3, cb275; replication factor C (activator 1) 3;
K10756 replication factor C subunit 3/5
Length=356
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 14/108 (12%)
Query 6 ASHVLEINAS----YDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQ 61
+++ LE+N S DR + ++EL+KT A++ S + K+++L E D+
Sbjct 89 SNYHLEVNPSDAGNSDRVV--IQELIKTVAQSQQIQSSAQR-------EFKVVLLTEVDR 139
Query 62 MTSAAQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPL 109
+T AQ+ALRR ME Y R L C+ +K+ I+SRC ++R PL
Sbjct 140 LTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRCLAVR-VPL 186
> cpv:cgd2_3180 replication factor C subunit 5 ; K10756 replication
factor C subunit 3/5
Length=345
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query 5 QASHVLEINASYDRGI--GSVRE-LVKTFAETTSASFSLSGAASSGPPKLKLIILDEADQ 61
Q+ H ++I+A D G G V + L+K + A+ S P ++ + EAD
Sbjct 86 QSPHHMQISAP-DLGTKDGIVTQYLIKQLSSQMGANSFFSKG-----PNYRVFTILEADV 139
Query 62 MTSAAQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMRFTPLKPE 112
++ AQ LRR ME Y+ N R L C+ ++ I P ++SRC +R PE
Sbjct 140 LSLKAQAGLRRTMEKYSNNSRLILHCEQLSSIIPPLRSRCLCIRVPLPSPE 190
> pfa:PF11_0117 replication factor C subunit 5, putative; K10756
replication factor C subunit 3/5
Length=349
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query 36 ASFSLSGAASSGPPKLKLIILDEADQMTSAAQNALRRIMETYARNVRFCLICDFVNKITP 95
S+ S + S P ++ + +A+ ++ AQ LRR +ETY RN R L + ++KI
Sbjct 111 CSYKSSASFFSKTPMYRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIE 170
Query 96 AIQSRCTSMRFTPLKPE 112
++SRC +R PL E
Sbjct 171 PLKSRCICIR-VPLPSE 186
> tpv:TP01_1062 replication factor C subunit 5; K10756 replication
factor C subunit 3/5
Length=319
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 0/54 (0%)
Query 52 KLIILDEADQMTSAAQNALRRIMETYARNVRFCLICDFVNKITPAIQSRCTSMR 105
K +++++AD ++ AQ ALRR MET +N R L +++I ++SRC +R
Sbjct 87 KDLLIEDADTLSQEAQAALRRTMETCIKNARMFLHVRQLSRIMAPLRSRCLCIR 140
> tpv:TP03_0565 replication factor C large subunit; K10754 replication
factor C subunit 1
Length=1084
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 23/144 (15%)
Query 8 HVLEINASYDRGIGSVRELVKTFAETTSASFSLSGAASSGPPKLK--------------- 52
HV+E+NAS R S+ + T + + S ++ + K
Sbjct 567 HVIELNASDQRSKNSIENIFPLVTGTLTLNTIYSASSITNNTSFKNKNNNSNVNGLNAKT 626
Query 53 LIILDEADQMTSAAQNALRRIMETYARNVRFC---LICD--FVNKITPAIQSRCTSMRFT 107
L+ILDE D M+S + ++ I E ++ C LIC+ F K++ + ++C +RF
Sbjct 627 LLILDEVDGMSSGDKGGIQAISELI--DITKCPIILICNDRFSQKMS-TLSNKCLDLRFN 683
Query 108 PLKPEALRRKAEEAAMLESMSVTE 131
P + + + LE++ VTE
Sbjct 684 PPPIDLYINRINKICKLENIKVTE 707
Lambda K H
0.317 0.128 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2231140792
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
Posted date: Sep 17, 2011 11:19 AM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40