bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
164,496 sequences; 82,071,388 total letters
Query= Emax_1740_orf1
Length=135
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_064450 DNA topoisomerase III beta-1, putative (EC:5... 162 3e-40
xla:398564 top3b, MGC53016; topoisomerase (DNA) III beta (EC:5... 147 6e-36
mmu:21976 Top3b; topoisomerase (DNA) III beta (EC:5.99.1.2); K... 143 1e-34
hsa:8940 TOP3B, FLJ39376; topoisomerase (DNA) III beta (EC:5.9... 141 7e-34
dre:100329289 topoisomerase (DNA) III beta-like; K03165 DNA to... 139 3e-33
ath:AT2G32000 DNA topoisomerase family protein; K03165 DNA top... 139 3e-33
bbo:BBOV_II000360 18.m06014; DNA topoisomerase; K03165 DNA top... 131 5e-31
cpv:cgd6_2390 DNA topoisomerase III beta-1 ; K03165 DNA topois... 126 2e-29
cel:Y48C3A.14 hypothetical protein; K03165 DNA topoisomerase I... 118 4e-27
bbo:BBOV_III001510 17.m07153; DNA topoisomerase family protein... 84.7 8e-17
dre:560212 top3a; topoisomerase (DNA) III alpha; K03165 DNA to... 82.8 3e-16
xla:444125 top3a, MGC80537, xtop3a; topoisomerase (DNA) III al... 81.3 9e-16
mmu:21975 Top3a, MGC106383; topoisomerase (DNA) III alpha (EC:... 79.7 2e-15
hsa:7156 TOP3A, TOP3; topoisomerase (DNA) III alpha (EC:5.99.1... 79.0 4e-15
tgo:TGME49_026480 DNA topoisomerase III alpha, putative (EC:5.... 72.8 3e-13
cel:Y56A3A.27 top-3; TOPoisomerase family member (top-3); K031... 71.6 7e-13
sce:YLR234W TOP3, EDR1; DNA Topoisomerase III, conserved prote... 70.1 2e-12
ath:AT5G63920 DNA topoisomerase III alpha, putative; K03165 DN... 68.2 6e-12
cpv:cgd5_1180 DNA topoisomerase III ; K03165 DNA topoisomerase... 60.5 1e-09
tpv:TP03_0692 DNA topoisomerase III; K03165 DNA topoisomerase ... 53.5 2e-07
eco:b1274 topA, asuA?, ECK1268, JW1266, supX; DNA topoisomeras... 53.1 2e-07
pfa:PF13_0251 DNA topoisomerase III, putative (EC:5.99.1.2); K... 40.0 0.002
ath:AT4G31210 DNA topoisomerase family protein 32.7 0.32
ath:AT3G46400 leucine-rich repeat protein kinase, putative 30.4 1.7
sce:YFL030W AGX1; Agx1p (EC:2.6.1.44); K00830 alanine-glyoxyla... 28.9 4.5
hsa:84059 GPR98, DKFZp761P0710, FEB4, KIAA0686, MASS1, USH2B, ... 28.5 6.6
ath:AT4G30200 VEL1; hypothetical protein 28.5 6.9
> tgo:TGME49_064450 DNA topoisomerase III beta-1, putative (EC:5.99.1.2);
K03165 DNA topoisomerase III [EC:5.99.1.2]
Length=841
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/136 (58%), Positives = 96/136 (70%), Gaps = 1/136 (0%)
Query 1 FQGKYGDLDASLLSYGPCQTPTLQLCVHRSDAINSFTPETYYYIDAAVSVGGQEIHMNWS 60
FQGKYGDLDASL+SYGPCQTPTLQ CV R D I++F PET+Y +D ++ VG QE+ + W
Sbjct 182 FQGKYGDLDASLVSYGPCQTPTLQFCVQRYDDIHAFQPETFYTLDTSIRVGEQELFLEWE 241
Query 61 RRQVFDLSVAQTFLAIVS-EGIGGKCESIKETEEIICMPKALNTVELLKAASNRLGIGPH 119
R QVFD A T+ IVS G + E EE + P+ALNTV +LK AS RLG+GP
Sbjct 242 RGQVFDSVTAHTYKDIVSARGAVAVVVDVTEKEEKMPRPQALNTVNMLKLASQRLGMGPQ 301
Query 120 RAMQIAERLYLGGFIT 135
+AMQ AERLYL G +T
Sbjct 302 QAMQTAERLYLSGKVT 317
> xla:398564 top3b, MGC53016; topoisomerase (DNA) III beta (EC:5.99.1.2);
K03165 DNA topoisomerase III [EC:5.99.1.2]
Length=858
Score = 147 bits (372), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 93/136 (68%), Gaps = 1/136 (0%)
Query 1 FQGKYGDLDASLLSYGPCQTPTLQLCVHRSDAINSFTPETYYYIDAAVSVGGQE-IHMNW 59
FQGKYG+LD+SL+S+GPCQTPTL CV R D I SF PETY+ + VS G + + ++W
Sbjct 200 FQGKYGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQVKVSHGQEHPLSLDW 259
Query 60 SRRQVFDLSVAQTFLAIVSEGIGGKCESIKETEEIICMPKALNTVELLKAASNRLGIGPH 119
R +VFD +AQ F+ I + ES+ + E+ P+ALNTVE+L+ AS+ LG+GP
Sbjct 260 DRVRVFDREIAQMFINITKTAKEAQVESVSKKEKAKQRPQALNTVEMLRVASSALGMGPQ 319
Query 120 RAMQIAERLYLGGFIT 135
MQIAERLY G+I+
Sbjct 320 HTMQIAERLYTQGYIS 335
> mmu:21976 Top3b; topoisomerase (DNA) III beta (EC:5.99.1.2);
K03165 DNA topoisomerase III [EC:5.99.1.2]
Length=862
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/136 (51%), Positives = 90/136 (66%), Gaps = 1/136 (0%)
Query 1 FQGKYGDLDASLLSYGPCQTPTLQLCVHRSDAINSFTPETYYYIDAAVSVGGQE-IHMNW 59
FQGKYGDLD+SL+S+GPCQTPTL CV R D I SF PETY+ + A V +E + ++W
Sbjct 200 FQGKYGDLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVHTDKEESLLLDW 259
Query 60 SRRQVFDLSVAQTFLAIVSEGIGGKCESIKETEEIICMPKALNTVELLKAASNRLGIGPH 119
R +VFD +AQ FL + E+ E+ P ALNTVE+L+ AS+ LG+GP
Sbjct 260 DRVRVFDWEIAQMFLNMTKLEKEAWVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQ 319
Query 120 RAMQIAERLYLGGFIT 135
AMQIAERLY G+I+
Sbjct 320 HAMQIAERLYTQGYIS 335
> hsa:8940 TOP3B, FLJ39376; topoisomerase (DNA) III beta (EC:5.99.1.2);
K03165 DNA topoisomerase III [EC:5.99.1.2]
Length=862
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 90/136 (66%), Gaps = 1/136 (0%)
Query 1 FQGKYGDLDASLLSYGPCQTPTLQLCVHRSDAINSFTPETYYYIDAAVSVG-GQEIHMNW 59
FQGKYGDLD+SL+S+GPCQTPTL CV R D I SF PETY+ + A V+ + + ++W
Sbjct 200 FQGKYGDLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDW 259
Query 60 SRRQVFDLSVAQTFLAIVSEGIGGKCESIKETEEIICMPKALNTVELLKAASNRLGIGPH 119
R +VFD +AQ FL + + E+ E+ P ALNTVE+L+ AS+ LG+GP
Sbjct 260 DRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQ 319
Query 120 RAMQIAERLYLGGFIT 135
AMQ AERLY G+I+
Sbjct 320 HAMQTAERLYTQGYIS 335
> dre:100329289 topoisomerase (DNA) III beta-like; K03165 DNA
topoisomerase III [EC:5.99.1.2]
Length=861
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 89/136 (65%), Gaps = 1/136 (0%)
Query 1 FQGKYGDLDASLLSYGPCQTPTLQLCVHRSDAINSFTPETYYYIDAAVSVGGQE-IHMNW 59
FQGKYG+LD+SL+S+GPCQTPTL CV R D I SF PE Y+ + A V G + ++W
Sbjct 200 FQGKYGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPEAYWVVQAKVFKGKDSPLTLDW 259
Query 60 SRRQVFDLSVAQTFLAIVSEGIGGKCESIKETEEIICMPKALNTVELLKAASNRLGIGPH 119
R +VFD + Q F+ + + +S+ + E+ P ALNTVE+L+ AS+ LG+GP
Sbjct 260 DRVRVFDRDIGQMFVNMAKTAKEARVDSVTKKEKAKQRPLALNTVEMLRVASSALGMGPQ 319
Query 120 RAMQIAERLYLGGFIT 135
MQIAERLY G+I+
Sbjct 320 HTMQIAERLYTQGYIS 335
> ath:AT2G32000 DNA topoisomerase family protein; K03165 DNA topoisomerase
III [EC:5.99.1.2]
Length=838
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 84/135 (62%), Gaps = 0/135 (0%)
Query 1 FQGKYGDLDASLLSYGPCQTPTLQLCVHRSDAINSFTPETYYYIDAAVSVGGQEIHMNWS 60
FQGKY +LD ++SYGPCQTPTL CV R IN+F PE ++ + + G E+ + W
Sbjct 169 FQGKYQNLDCRVISYGPCQTPTLGFCVQRYMHINTFKPEKFWALRPYIRKDGYELQLEWE 228
Query 61 RRQVFDLSVAQTFLAIVSEGIGGKCESIKETEEIICMPKALNTVELLKAASNRLGIGPHR 120
RR++FDL A F +V EG K + E +E+ P LNTV LLK AS+ LG GP
Sbjct 229 RRRLFDLEAATVFQKLVVEGRTAKVMDVSEKQEVKGRPAGLNTVNLLKVASSALGFGPQT 288
Query 121 AMQIAERLYLGGFIT 135
AM +AERLY GFI+
Sbjct 289 AMHLAERLYTQGFIS 303
> bbo:BBOV_II000360 18.m06014; DNA topoisomerase; K03165 DNA topoisomerase
III [EC:5.99.1.2]
Length=878
Score = 131 bits (330), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 89/146 (60%), Gaps = 11/146 (7%)
Query 1 FQGKYGDLDASLLSYGPCQTPTLQLCVHRSDAINSFTPETYYYIDAAVSVGGQEIHMNWS 60
FQGKYGDLD++ +SYGPCQTPTL CV R +AI F E YY + +S GQ I W+
Sbjct 214 FQGKYGDLDSTCISYGPCQTPTLFFCVDRYNAIARFQEEPYYKLICDISYEGQYIPFTWN 273
Query 61 RRQVFDLSVAQTFLAIVS--------EGIG---GKCESIKETEEIICMPKALNTVELLKA 109
R ++FD SVA+ F +V + +G G I I PKALNTV +LK
Sbjct 274 RGRIFDKSVARIFQQLVRCEKYYNILQLMGANKGVLTDIVTKRSINSSPKALNTVTMLKE 333
Query 110 ASNRLGIGPHRAMQIAERLYLGGFIT 135
AS+R G+GPH+ MQ AE LYL G+I+
Sbjct 334 ASSRFGMGPHKTMQTAEHLYLNGYIS 359
> cpv:cgd6_2390 DNA topoisomerase III beta-1 ; K03165 DNA topoisomerase
III [EC:5.99.1.2]
Length=835
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 86/138 (62%), Gaps = 3/138 (2%)
Query 1 FQGKYGDLD-ASLLSYGPCQTPTLQLCVHRSDAINSFTPETYYYIDAAVSVGGQEIHMNW 59
+ K+GD + +S++SYGPCQTPTL V R D+INSF PE YY I A +S Q+I++ W
Sbjct 196 LKSKFGDFNKSSIISYGPCQTPTLFFTVQRRDSINSFIPEKYYTISATLSKDSQDINLIW 255
Query 60 SRRQVFDLSVAQTFLAIV--SEGIGGKCESIKETEEIICMPKALNTVELLKAASNRLGIG 117
SR +VF+L VA FL ++ + + + I P LNTV +LK +S LGIG
Sbjct 256 SRSRVFELQVANCFLQLIQNKKPLSARVVDITSKNSRRIRPLPLNTVSMLKLSSTILGIG 315
Query 118 PHRAMQIAERLYLGGFIT 135
P + + IAE+LYL GF T
Sbjct 316 PFQTLNIAEKLYLSGFTT 333
> cel:Y48C3A.14 hypothetical protein; K03165 DNA topoisomerase
III [EC:5.99.1.2]
Length=855
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 82/137 (59%), Gaps = 2/137 (1%)
Query 1 FQGKYGDLDASLLSYGPCQTPTLQLCVHRSDAINSFTPETYYYI--DAAVSVGGQEIHMN 58
FQGKYGDLD++++SYGPCQTPTL CV R D I F PE Y+ + + S GQ
Sbjct 201 FQGKYGDLDSNVISYGPCQTPTLGFCVTRHDQIVQFKPEQYWVLKTNFTTSDDGQIFSPE 260
Query 59 WSRRQVFDLSVAQTFLAIVSEGIGGKCESIKETEEIICMPKALNTVELLKAASNRLGIGP 118
W R ++FD VA+ F+ + + G + + E P ALNTVEL++ AS+ LG+ P
Sbjct 261 WQRGRIFDAEVARVFVDRIKKCHTGLVLDVSKKEARKERPCALNTVELMRVASSSLGMSP 320
Query 119 HRAMQIAERLYLGGFIT 135
M +AE LY G+I+
Sbjct 321 STTMHVAEALYTQGYIS 337
> bbo:BBOV_III001510 17.m07153; DNA topoisomerase family protein;
K03165 DNA topoisomerase III [EC:5.99.1.2]
Length=633
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 0/129 (0%)
Query 7 DLDASLLSYGPCQTPTLQLCVHRSDAINSFTPETYYYIDAAVSVGGQEIHMNWSRRQVFD 66
D ++ +LSYGPCQ PTL V R I SF PE+++ I + GG++ W R ++FD
Sbjct 210 DTESKVLSYGPCQLPTLGFVVDRFFKIESFQPESFWSIQVFIESGGKDYLFRWDRVKLFD 269
Query 67 LSVAQTFLAIVSEGIGGKCESIKETEEIICMPKALNTVELLKAASNRLGIGPHRAMQIAE 126
T E K + P L+TVE+ K A+ L I H +M++AE
Sbjct 270 RLAVLTLYEACLENPMAKVTHVSNRSTKRYPPLPLDTVEMHKDAAMHLKISSHESMRLAE 329
Query 127 RLYLGGFIT 135
LY G+++
Sbjct 330 SLYNKGYVS 338
> dre:560212 top3a; topoisomerase (DNA) III alpha; K03165 DNA
topoisomerase III [EC:5.99.1.2]
Length=998
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 65/129 (50%), Gaps = 1/129 (0%)
Query 8 LDASLLSYGPCQTPTLQLCVHRSDAINSFTPETYYYIDAAVSVGGQE-IHMNWSRRQVFD 66
L L+SYG CQ PTL V R AI +F PET++ I +E + NW R ++F+
Sbjct 231 LSDQLISYGSCQFPTLGFVVERFKAIQAFIPETFFKIKVVHEPNEEESVEFNWKRHRLFN 290
Query 67 LSVAQTFLAIVSEGIGGKCESIKETEEIICMPKALNTVELLKAASNRLGIGPHRAMQIAE 126
+ + E K S+ + P L+TVEL K AS +L I M+IAE
Sbjct 291 HTACLVLYQMCMEEPMAKVISVTSKPKSKWRPLPLDTVELEKLASRKLRISAKETMKIAE 350
Query 127 RLYLGGFIT 135
+LY GFI+
Sbjct 351 KLYTQGFIS 359
> xla:444125 top3a, MGC80537, xtop3a; topoisomerase (DNA) III
alpha (EC:5.99.1.2); K03165 DNA topoisomerase III [EC:5.99.1.2]
Length=1022
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 62/128 (48%), Gaps = 0/128 (0%)
Query 8 LDASLLSYGPCQTPTLQLCVHRSDAINSFTPETYYYIDAAVSVGGQEIHMNWSRRQVFDL 67
L L+SYG CQ PTL V R AI +F PET+Y I + +W R ++F+
Sbjct 239 LSNQLISYGSCQFPTLGFVVERFKAIQAFIPETFYKIKVTHEHEDGLVEFSWKRNRLFNH 298
Query 68 SVAQTFLAIVSEGIGGKCESIKETEEIICMPKALNTVELLKAASNRLGIGPHRAMQIAER 127
+ I E + + P AL+TVEL K AS +L IG M+ AE+
Sbjct 299 TACLVLYQICMEDPMATVMEVGSKPKSKWRPVALDTVELEKLASRKLKIGAKETMKTAEK 358
Query 128 LYLGGFIT 135
LY GFI+
Sbjct 359 LYTQGFIS 366
> mmu:21975 Top3a, MGC106383; topoisomerase (DNA) III alpha (EC:5.99.1.2);
K03165 DNA topoisomerase III [EC:5.99.1.2]
Length=1003
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 63/128 (49%), Gaps = 0/128 (0%)
Query 8 LDASLLSYGPCQTPTLQLCVHRSDAINSFTPETYYYIDAAVSVGGQEIHMNWSRRQVFDL 67
L L+SYG CQ PTL V R AI +F PE ++ I + NW R ++F+
Sbjct 234 LAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHKIKVTHDHKDGTVEFNWKRYRLFNH 293
Query 68 SVAQTFLAIVSEGIGGKCESIKETEEIICMPKALNTVELLKAASNRLGIGPHRAMQIAER 127
+ + E ++ + P+AL+TVEL K AS +L I M+IAE+
Sbjct 294 TACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEK 353
Query 128 LYLGGFIT 135
LY G+I+
Sbjct 354 LYTQGYIS 361
> hsa:7156 TOP3A, TOP3; topoisomerase (DNA) III alpha (EC:5.99.1.2);
K03165 DNA topoisomerase III [EC:5.99.1.2]
Length=1001
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 63/128 (49%), Gaps = 0/128 (0%)
Query 8 LDASLLSYGPCQTPTLQLCVHRSDAINSFTPETYYYIDAAVSVGGQEIHMNWSRRQVFDL 67
L L+SYG CQ PTL V R AI +F PE ++ I + NW R ++F+
Sbjct 234 LAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFNWKRHRLFNH 293
Query 68 SVAQTFLAIVSEGIGGKCESIKETEEIICMPKALNTVELLKAASNRLGIGPHRAMQIAER 127
+ + E ++ + P+AL+TVEL K AS +L I M+IAE+
Sbjct 294 TACLVLYQLCVEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEK 353
Query 128 LYLGGFIT 135
LY G+I+
Sbjct 354 LYTQGYIS 361
> tgo:TGME49_026480 DNA topoisomerase III alpha, putative (EC:5.99.1.2);
K03165 DNA topoisomerase III [EC:5.99.1.2]
Length=677
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query 8 LDASLLSYGPCQTPTLQLCVHRSDAINSFTPETYYYIDAAVSVGGQE---------IHMN 58
L + +SYGPCQ+PTL V R + +F E Y+ I +S E I
Sbjct 203 LPSPTISYGPCQSPTLGFVVSRFVEVENFVREAYWTIRVTISKPDDEKGANAPPLSIDFT 262
Query 59 WSRRQVFDLSVAQTFLAIVSEGIGGKCESIKETEEIICMPKALNTVELLKAASNRLGIGP 118
W R+++FD + E ++ TE P L TVEL K AS +L +
Sbjct 263 WERQRLFDQLAVLVLYEMCLENPEATVTDVRGTERTKQRPVPLCTVELHKMASRKLRMSS 322
Query 119 HRAMQIAERLYLGGFIT 135
R M IAE LY G I+
Sbjct 323 ARCMSIAESLYQRGIIS 339
> cel:Y56A3A.27 top-3; TOPoisomerase family member (top-3); K03165
DNA topoisomerase III [EC:5.99.1.2]
Length=759
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query 1 FQGKYGDLDAS-LLSYGPCQTPTLQLCVHRSDAINSFTPETYYYIDAAVSVGGQEIHMNW 59
F+ G D S ++SYG CQ PTL R I +F E ++ + + ++ W
Sbjct 198 FRDLLGQNDTSQVISYGSCQFPTLGFVTDRYKMIENFVSEPFWKLIVEHTRESHKVEFLW 257
Query 60 SRRQVFDLSVAQTFLAIVSEGIGGKCESIKETEEIICMPKALNTVELLKAASNRLGIGPH 119
R ++FD E E + + + P+AL+TVEL K ++L +
Sbjct 258 DRNRLFDRDTVDILHDECKETKEAHVEKVAKKPKSKWRPQALDTVELEKLGISKLRMSAK 317
Query 120 RAMQIAERLYLGGFIT 135
+ MQ+AE+LY GFI+
Sbjct 318 QTMQVAEKLYSKGFIS 333
> sce:YLR234W TOP3, EDR1; DNA Topoisomerase III, conserved protein
that functions in a complex with Sgs1p and Rmi1p to relax
single-stranded negatively-supercoiled DNA preferentially,
involved in telomere stability and regulation of mitotic recombination
(EC:5.99.1.2); K03165 DNA topoisomerase III [EC:5.99.1.2]
Length=656
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 4/131 (3%)
Query 9 DASLLSYGPCQTPTLQLCVHRSDAINSFTPETYYYIDAAV--SVGGQEIHMNWSRRQVFD 66
D+ ++SYG CQ PTL V R + I +F PE ++YI V G W R +FD
Sbjct 225 DSQVVSYGTCQFPTLGFVVDRFERIRNFVPEEFWYIQLVVENKDNGGTTTFQWDRGHLFD 284
Query 67 LSVAQTFLAIVSEGIGGKCE--SIKETEEIICMPKALNTVELLKAASNRLGIGPHRAMQI 124
TF E G + +K P L TVEL K + L + +++
Sbjct 285 RLSVLTFYETCIETAGNVAQVVDLKSKPTTKYRPLPLTTVELQKNCARYLRLNAKQSLDA 344
Query 125 AERLYLGGFIT 135
AE+LY GFI+
Sbjct 345 AEKLYQKGFIS 355
> ath:AT5G63920 DNA topoisomerase III alpha, putative; K03165
DNA topoisomerase III [EC:5.99.1.2]
Length=926
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query 6 GDLDASLLSYGPCQTPTLQLCVHRSDAINSFTPETYYYIDAAVSVGGQEIHMNWSRRQVF 65
G+ + ++SYGPCQ PTL V R I + PE ++ I+ + NW R +F
Sbjct 211 GEERSRVISYGPCQFPTLGFIVERYWEIQAHEPEEFWTINCSHQSEEGLATFNWMRGHLF 270
Query 66 DLSVAQTFLAIVSEGIGGKCESIKETEEIICMPK-ALNTVELLKAASNRLGIGPHRAMQI 124
D + A + E ++ E P LNT+EL K AS + M++
Sbjct 271 DYASAVILYEMCVEEPTATVMNVPHPRERFKYPPYPLNTIELEKRASRYFRLSSEHTMKV 330
Query 125 AERLYLGGFIT 135
AE LY GFI+
Sbjct 331 AEELYQAGFIS 341
> cpv:cgd5_1180 DNA topoisomerase III ; K03165 DNA topoisomerase
III [EC:5.99.1.2]
Length=814
Score = 60.5 bits (145), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 58/131 (44%), Gaps = 8/131 (6%)
Query 13 LSYGPCQTPTLQLCVHRSDAINSFTPETYYYIDAAVSVGGQE--------IHMNWSRRQV 64
LSYG CQ PTL V R I +F E + I V + E + W R ++
Sbjct 252 LSYGTCQFPTLGFVVSRYKKIINFREEDEWTITLEVKMKIYEGNNKEMSNVIFEWERGKL 311
Query 65 FDLSVAQTFLAIVSEGIGGKCESIKETEEIICMPKALNTVELLKAASNRLGIGPHRAMQI 124
FD E + + I + + P LNTVE+ K AS++L P + + I
Sbjct 312 FDNLFTFIIYETCIENSNARIKEIVNNKILKRKPLPLNTVEMTKIASDKLKFSPIKCINI 371
Query 125 AERLYLGGFIT 135
AE LY G+I+
Sbjct 372 AENLYRKGYIS 382
> tpv:TP03_0692 DNA topoisomerase III; K03165 DNA topoisomerase
III [EC:5.99.1.2]
Length=531
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 52/127 (40%), Gaps = 39/127 (30%)
Query 10 ASLLSYGPCQTPTLQLCVHRSDAINSFTPETYYYIDAAVSVGGQEIHMNWSRRQVFDLSV 69
A++LSYG CQ PTL V R I +F E ++ I+ V+ + W R+++FD
Sbjct 158 AAILSYGTCQLPTLGFVVERFILIENFISEPFWTINVEVTHDNIPVTFLWHRKRIFD--- 214
Query 70 AQTFLAIVSEGIGGKCESIKETEEIICMPKALNTVELL-KAASNRLGIGPHRAMQIAERL 128
EL+ K S L I HR MQ+AE L
Sbjct 215 -----------------------------------ELMNKDVSRFLRISSHRCMQLAESL 239
Query 129 YLGGFIT 135
Y G+I+
Sbjct 240 YNKGYIS 246
> eco:b1274 topA, asuA?, ECK1268, JW1266, supX; DNA topoisomerase
I, omega subunit (EC:5.99.1.2); K03168 DNA topoisomerase
I [EC:5.99.1.2]
Length=865
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query 13 LSYGPCQTPTLQLCVHRSDAINSFTPETYYYIDAAVSVGGQE------IHMNWSRRQVFD 66
LS G Q+ ++L V R I +F PE ++ +DA+ + E H N + +
Sbjct 191 LSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGEALALQVTHQNDKPFRPVN 250
Query 67 LSVAQTFLAIVSEGIGGKCESIKETEEIICMPKA-LNTVELLKAASNRLGIGPHRAMQIA 125
Q ++++ + E +E + P A T L +AAS RLG G + M +A
Sbjct 251 KEQTQAAVSLLEKARYSVLE--REDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMA 308
Query 126 ERLYLGGFIT 135
+RLY G+IT
Sbjct 309 QRLYEAGYIT 318
> pfa:PF13_0251 DNA topoisomerase III, putative (EC:5.99.1.2);
K03165 DNA topoisomerase III [EC:5.99.1.2]
Length=710
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 0/48 (0%)
Query 9 DASLLSYGPCQTPTLQLCVHRSDAINSFTPETYYYIDAAVSVGGQEIH 56
+ S++SYGPCQ PTL V+R I +F E Y+ I EI+
Sbjct 203 ETSIISYGPCQFPTLGFVVNRYLDIKNFKNEYYWSIKMKYVYNNDEIN 250
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query 55 IHMNWSRRQVFD-LSVAQTFLAIVSEGIGGKCESIKETEEIICMPKALNTVELLKAASNR 113
+ WSR ++FD L+V + ++ + K ++ E+E P LNT+++ K S
Sbjct 340 VDFTWSRIRLFDHLAVILIYEELLKNPLC-KITNVYESETRKYKPYPLNTLQMTKLVSIY 398
Query 114 LGIGPHRAMQIAERLYLGGFIT 135
I M +AE+LY G+I+
Sbjct 399 FKISSKECMMLAEKLYNKGYIS 420
> ath:AT4G31210 DNA topoisomerase family protein
Length=1280
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 17/131 (12%)
Query 14 SYGPCQTPTLQLCVHRSDAINSFTPETYYYIDAAVSVGGQEIHMNWS-------RRQVFD 66
S G Q+ L L R I+ F P+ Y+ + + V G++ +S +++
Sbjct 637 SAGRVQSAALALVCDRESEIDGFKPQEYWTV--GIKVKGKDNSATFSAHLTSLNSKRLNQ 694
Query 67 LSVAQTFLA------IVSEGIGGKCESIKETEEIICMPKALNTVELLKAASNRLGIGPHR 120
LS++ A I SEG K T + P +T L + A+N+L
Sbjct 695 LSISSEANAQDIEQRIKSEGFLVKGTKTSTTRKNPPTPYITST--LQQDAANKLHFSTAH 752
Query 121 AMQIAERLYLG 131
M++A++LY G
Sbjct 753 TMKLAQKLYEG 763
> ath:AT3G46400 leucine-rich repeat protein kinase, putative
Length=883
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 18/105 (17%)
Query 3 GKYGDLDASLLSYGPCQTPTLQLCVHRSDAI-NSFTPETY----YYIDAAVSVGGQEIHM 57
GK G +DASL S P TL+ + D I N + Y Y I A ++ G + +
Sbjct 62 GKIGRIDASLESKYPRSQTTLR---YFPDGIRNCYNVNVYKGTNYLIRATINYGNYD-GL 117
Query 58 NWSRRQVFDLSVAQTFLAIVS--EGIGGKCESIKETEEIICMPKA 100
N S R FDL + F + + +GG EEII +PK+
Sbjct 118 NISPR--FDLYIGPNFWVTIDLEKHVGGDT-----WEEIIHIPKS 155
> sce:YFL030W AGX1; Agx1p (EC:2.6.1.44); K00830 alanine-glyoxylate
transaminase / serine-glyoxylate transaminase / serine-pyruvate
transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
Length=385
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query 2 QGKYGDLDASLLSYGPCQTPTLQLCVHRSDAINSFTPETYYYIDAAVSVGGQEIHMN 58
Q YG A +++ T L S AI +PET++ +DA S+G +E +
Sbjct 135 QNSYG---AVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFD 188
> hsa:84059 GPR98, DKFZp761P0710, FEB4, KIAA0686, MASS1, USH2B,
USH2C, VLGR1, VLGR1b; G protein-coupled receptor 98
Length=6306
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query 39 ETYYYID-AAVSVGG-QEIHMNWSRRQVFDLSVAQTFLAIVSEGIGGKCESIKETEEIIC 96
E ++YI+ +V + G Q+ +NWS R D SVA + ++ + G S ET +
Sbjct 5087 EEFFYINLTSVEIRGLQKFDVNWSPRLNLDFSVA-VITILDNDDLAGMDISFPETTVAVA 5145
Query 97 MPKALNTVE 105
+ L VE
Sbjct 5146 VDTTLIPVE 5154
> ath:AT4G30200 VEL1; hypothetical protein
Length=714
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 19/67 (28%)
Query 54 EIHMNWSRRQVFDL-----------------SVAQTFLAIVSEGIGGKCESIKETEEIIC 96
E+ WSR+++ + + +T L IVSE G+CE K + C
Sbjct 39 EVLQAWSRQEILQILCAEMGKERKYTGLTKVKIIETLLKIVSEKNSGECEGKKRDSD--C 96
Query 97 MPKALNT 103
+P NT
Sbjct 97 LPIQRNT 103
Lambda K H
0.321 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2296762580
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
Posted date: Sep 17, 2011 11:19 AM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40